| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 4,992,605 – 4,992,695 |
| Length | 90 |
| Max. P | 0.968863 |
| Location | 4,992,605 – 4,992,695 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 105 |
| Reading direction | reverse |
| Mean pairwise identity | 73.68 |
| Mean single sequence MFE | -31.18 |
| Consensus MFE | -14.73 |
| Energy contribution | -15.51 |
| Covariance contribution | 0.78 |
| Combinations/Pair | 1.06 |
| Mean z-score | -2.30 |
| Structure conservation index | 0.47 |
| SVM decision value | 1.63 |
| SVM RNA-class probability | 0.968863 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4992605 90 - 22224390 UUGCAAUUUGCCGCUGCCG--------GACGUUCUGAGCGCGUCUCAAGUGGCAGAC---GCAACCCUUUACGUUGCAAAUGCCCCCCCCCCAACACCCCC---- ..(((.(((((((((...(--------(((((.......))))))..))))))))).---(((((.......)))))...)))..................---- ( -28.10) >DroPse_CAF1 79246 96 - 1 UUGCAAUUCGCCGCCGCUGCCCCCACUGCCGCUCUGAGCGCGUCUCAAGUGGCAGACGAGGCAACCCUUUAGGUC-----UGCUUCCCAGCUCCUGCCUGC---- ..(((....((.(..((((......((((((((.((((.....))))))))))))..((((((..((....))..-----)))))).))))..).)).)))---- ( -34.50) >DroSec_CAF1 59420 94 - 1 UUGCAAUUUGCCGCUGCCG--------GACGUUCUGAGCGCGUCUCAAGUGGCAGAC---GCAACCCUUUACGUUGCAAAUGCCCCCAACACACAGCCCCCUCGC ..(((.(((((((((...(--------(((((.......))))))..))))))))).---(((((.......)))))...)))...................... ( -28.10) >DroEre_CAF1 63466 80 - 1 UUGCAAUUUGCCGCUACCG--------GACGUUCUGAGCGCGUCUCAAGUGGCAGAC---GCAACCCUUUACGUUGCGAAUACCCCCAUUC-------------- ......(((((((((...(--------(((((.......))))))..)))))))))(---(((((.......)))))).............-------------- ( -26.70) >DroYak_CAF1 60871 85 - 1 UUGCAAUUUGCCGCUGCCG--------GACGUUCUCAGCGCGUCUCAAGUGGCAGAC---GCAACCCUUUAGGUUGCAAAUACCCCCAUUA-----CCCCC---- ......(((((((((...(--------(((((.......))))))..))))))))).---((((((.....))))))..............-----.....---- ( -29.50) >DroPer_CAF1 73940 96 - 1 UUGCAAUUCGCCGCCGCUGCCCCCACUGCCGCUCUGAGCGCGUCUCAAGUGGCAGACGAGGCAACCCUUUGGGUC-----UGCUUCCCAGCUGCUGCCUGC---- ..(((....((.((.((((......((((((((.((((.....))))))))))))..((((((((((...)))).-----)))))).)))).)).)).)))---- ( -40.20) >consensus UUGCAAUUUGCCGCUGCCG________GACGUUCUGAGCGCGUCUCAAGUGGCAGAC___GCAACCCUUUACGUUGCAAAUGCCCCCAACC__C_GCCCCC____ ((((..(((((((((............(((((.......)))))...)))))))))....))))......................................... (-14.73 = -15.51 + 0.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:19:12 2006