Locus 1802

Sequence ID X_DroMel_CAF1
Location 4,990,992 – 4,991,087
Length 95
Max. P 0.941024
window2940

overview

Window 0

Location 4,990,992 – 4,991,087
Length 95
Sequences 6
Columns 99
Reading direction reverse
Mean pairwise identity 78.98
Mean single sequence MFE -28.05
Consensus MFE -18.80
Energy contribution -18.97
Covariance contribution 0.17
Combinations/Pair 1.17
Mean z-score -2.21
Structure conservation index 0.67
SVM decision value 1.31
SVM RNA-class probability 0.941024
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 4990992 95 - 22224390
AUACAAUUGCAAUUUCCUGGGCUCU-AUUUCUGUGUGCACUUUUCACUUAAUUGCACACAG--UUACGCACACAGGGAAAAAGGGAGACG-CAGGAGAA
............(((((((.(((((-.(..((((((((..........((((((....)))--))).))))))))..).....)))).).-))))))). ( -31.20)
>DroPse_CAF1 74810 91 - 1
ACACAAUUGCACUUUCCCGGCUUCCCGUGUGUGUGUGCACUUUUCAUUUAAAUGCACACGGAAUUACGCA--CGGGAACA-AAUUGCAGG-UGGG----
.(((...((((.(((....(.((((((((((((((((((.(((......))))))))))......)))))--))))))))-)).)))).)-))..---- ( -32.20)
>DroSec_CAF1 57830 93 - 1
AUACAAUUGCAAUUUCCUGGACUCU-AUUUCUGUGUGCACUUUUCACUUAAUUGCACACAG--UUACGCA--CAGGGAAAGAGGGAGACG-CAGGAUGU
..(((.((((..(((((((..(..(-(...(((((((((.((.......)).)))))))))--.)).)..--)))))))....(....))-)))..))) ( -28.10)
>DroEre_CAF1 61861 92 - 1
AUACAAUUGCAAUUUCCUGGGCUCU-AUUUCUGUGUGCACUUUUCACUUAAUUGCACACUG--GUACGCA--CAGGGAAA-AAGGAGAGG-UAGGAUGU
.(((..((.(..(((((((.((..(-(((...(((((((.((.......)).))))))).)--))).)).--))))))).-..).))..)-))...... ( -22.60)
>DroYak_CAF1 59311 93 - 1
AUACAAUUGCAAUUUCCUCGGCUCU-AUUUCUGUGUGCACUUUUCACUUAAUUGCACACAG--CUACGCA--CAGGGAAA-AGGGAGAUGCCAGGAUGU
........(((.((((((...((((-....(((((((((.((.......)).)))))))))--.......--.))))...-)))))).)))........ ( -24.50)
>DroPer_CAF1 69599 91 - 1
ACACAAUUGCACUUUCCCGGCUGCUCGUGUGUGUGUGCACUUUUCAUUUAAAUGCACACGGAAUUACGCA--CGGGAACA-AAUUGCAGG-UGGG----
...............((((.((((..(((((((((((((.(((......))))))))))......)))))--)(....).-....)))).-))))---- ( -29.70)
>consensus
AUACAAUUGCAAUUUCCUGGGCUCU_AUUUCUGUGUGCACUUUUCACUUAAUUGCACACAG__UUACGCA__CAGGGAAA_AAGGAGAGG_CAGGAUGU
............(((((((...........(((((((((.((.......)).)))))))))...........))))))).................... (-18.80 = -18.97 +   0.17)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:19:11 2006