| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 4,983,658 – 4,983,756 |
| Length | 98 |
| Max. P | 0.957064 |
| Location | 4,983,658 – 4,983,756 |
|---|---|
| Length | 98 |
| Sequences | 3 |
| Columns | 98 |
| Reading direction | reverse |
| Mean pairwise identity | 78.34 |
| Mean single sequence MFE | -24.10 |
| Consensus MFE | -17.81 |
| Energy contribution | -17.93 |
| Covariance contribution | 0.12 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.98 |
| Structure conservation index | 0.74 |
| SVM decision value | 1.47 |
| SVM RNA-class probability | 0.957064 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4983658 98 - 22224390 AAUGCGGCAGCGAAACGAACGGUUGGGGGAAAAUGGUGGGAAAUCGCCGGCUGAGGCCGUGGAAAAAGCCAUGGUUUGAAUGGUUUGAGACUCAGGAA ..(((....)))...(((((.(((...((....((((((....)))))).)).(((((((((......))))))))).))).)))))........... ( -26.60) >DroSec_CAF1 49111 81 - 1 AACG-----------------GUUGGGGGAAAAUUGUGGGAAAUCGCCGGCUGAGGCCGUGGAAAAAGCCAUGGUUUGAAUGGUUGGAGACUCAGGAA ....-----------------............((.((((...((.((((((((((((((((......)))))))))...))))))).)))))).)). ( -23.10) >DroYak_CAF1 51570 80 - 1 AAUG-----------------GGUG-CGGAAAAUGGUGGGAAAUCGCCGGCUGAGGUCGUGGAAUGAGGCAUGGCUCGGAUGGUUUGAGACUCAGGAA ..((-----------------(((.-((((..(((((((....)))))..(((((.(((((........))))))))))))..))))..))))).... ( -22.60) >consensus AAUG_________________GUUGGGGGAAAAUGGUGGGAAAUCGCCGGCUGAGGCCGUGGAAAAAGCCAUGGUUUGAAUGGUUUGAGACUCAGGAA .................................((((((....)))))).((((((((((((......)))))))(((((...)))))..)))))... (-17.81 = -17.93 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:19:10 2006