Locus 180

Sequence ID X_DroMel_CAF1
Location 639,252 – 639,372
Length 120
Max. P 0.521664
window283

overview

Window 3

Location 639,252 – 639,372
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 87.00
Mean single sequence MFE -48.39
Consensus MFE -31.76
Energy contribution -33.48
Covariance contribution 1.72
Combinations/Pair 1.03
Mean z-score -1.96
Structure conservation index 0.66
SVM decision value -0.02
SVM RNA-class probability 0.521664
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 639252 120 + 22224390
CUACGCACCGGGAUUUGUGGAGCUGCCAGCACUGGUCCUGCUCCUGCUUGGGCUGUACUUCACCCUGAGAGCCUCCAGGUCUCUGCUCUCCCUGCAGCAACAGUUGCAGCCCACCCUGGC
.......(((((....(((((((.((((....))))...))))).)).(((((((((((.......((((.((....))))))(((((.....).))))..)).))))))))).))))). ( -45.80)
>DroPse_CAF1 6710 120 + 1
CUCGGCCCCCGGAUUCGUGGAGCUGCCCGCCCUGGUGCUGCUCCUCCUGGGGCUGUACUUUACGCUGCGCGCCUCCCGCUCCCUGCACUCGCUGCAGCAGCAGCUCCAGCCCACGCUGGC
..(((((((.(((.....(((((.((((.....)).)).)))))))).)))))))........((((((((.....)))...(((((.....)))))..))))).(((((....))))). ( -54.70)
>DroSec_CAF1 4450 120 + 1
CUACGCACCGGGAUUCGUGGAGCUGCCAGCACUGAUCCUCCUCCUGCUUGGGCUGUACUUCACCCUGAGAGCCUCCAGGUCUCUGCUCUUCCUGCAGCUGCAGUUGCAGCCCACCCUGGC
.......(((((....((((.(((((.((((..((.(((.......((..((.((.....)).))..)).......)))))..))))....((((....))))..)))))))))))))). ( -42.54)
>DroSim_CAF1 6478 120 + 1
CUACGCACCGGGAUUCGUGGAGCUGCCAGCACUGGUCCUCCUCCUGCUUGGGCUGUACUUCACCCUGAGAGCCUCCAGGUCCCUGCUCUUCCUGCAGCUGCAGUUGCAGCCCACCCUGGC
.......(((((....(.((((..((((....)))).)))).).....(((((((((.........((((((....((....)))))))).((((....)))).))))))))).))))). ( -44.20)
>DroPer_CAF1 6922 120 + 1
CUCGGCCCCCGGAUUCGUGGAGCUGCCCGCCCUGGUGCUGCUCCUCCUGGGGCUGUACUUUACGCUGCGCGCCUCCCGCUCCCUGCACUCGCUGCAGCAGCAGCUCCAGCCCACGCUGGC
..(((((((.(((.....(((((.((((.....)).)).)))))))).)))))))........((((((((.....)))...(((((.....)))))..))))).(((((....))))). ( -54.70)
>consensus
CUACGCACCGGGAUUCGUGGAGCUGCCAGCACUGGUCCUGCUCCUGCUUGGGCUGUACUUCACCCUGAGAGCCUCCAGGUCCCUGCUCUCCCUGCAGCAGCAGUUGCAGCCCACCCUGGC
.......(((((......(((((.(((......)))...))))).....((((((((((....((((........))))...((((.......))))....)).))))))))..))))). (-31.76 = -33.48 +   1.72)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:14 2006