Locus 18

Sequence ID X_DroMel_CAF1
Location 45,450 – 45,541
Length 91
Max. P 0.991120
window20

overview

Window 0

Location 45,450 – 45,541
Length 91
Sequences 4
Columns 119
Reading direction reverse
Mean pairwise identity 69.28
Mean single sequence MFE -19.09
Consensus MFE -12.20
Energy contribution -12.76
Covariance contribution 0.56
Combinations/Pair 1.10
Mean z-score -1.92
Structure conservation index 0.64
SVM decision value 2.25
SVM RNA-class probability 0.991120
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 45450 91 - 22224390
GUGCGUUAAA--AAUGGC---------------------AACAUAAAGCUAACAAUAACCAAAACCUAAAA-----AAACGAUUGGUGGCUAACGAACUCUCGUCAUUGAAUCACGUUU
(((.(((...--((((((---------------------.......(((((.((((...............-----.....)))).)))))...((....)))))))).)))))).... ( -14.35)
>DroSec_CAF1 32046 114 - 1
GUGUUUUAACGCACUAGUGCGUUAAAAUAAAAUAA----UACAUAAAGCUACCAAUACCCAAUACCUAAAAA-AAAAAACGAUUGGUGGCUAACGAACUCUCGUCAUUGAAUCACGUUU
.((((((((((((....))))))))))))......----.......((((((((((................-........)))))))))).((((....))))............... ( -27.46)
>DroSim_CAF1 32546 113 - 1
AUGCGUUAAA--AAUAGUGCGUUAAAAUAAAAUAA----UACAUAAAGCUACCAAUACCCAAUACCUAAAAAAAAAAAACGAUUGGUGGCUAACGAACUCUCGUCAUUGAAUCACGUUU
..........--....(((..((((..........----.......((((((((((.........................)))))))))).((((....))))..))))..))).... ( -17.31)
>DroEre_CAF1 14139 85 - 1
GUGUGUAAGA-----------------------AAUGGCAACAAAAAGCAAUCAAUAC-------CUAC----AAAAUUCGAUUGAUGGCUGACGAGCUCUCGUCAUUGAAUCACGUUU
(((..(((..-----------------------..((....))...(((.((((((..-------....----........)))))).)))(((((....))))).)))...))).... ( -17.24)
>consensus
GUGCGUUAAA__AAUAGU_______________AA____AACAUAAAGCUACCAAUACCCAAUACCUAAAA__AAAAAACGAUUGGUGGCUAACGAACUCUCGUCAUUGAAUCACGUUU
(((..((((.....................................((((((((((.........................)))))))))).((((....))))..))))..))).... (-12.20 = -12.76 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:31:24 2006