Locus 1797

Sequence ID X_DroMel_CAF1
Location 4,975,500 – 4,975,615
Length 115
Max. P 0.703668
window2932

overview

Window 2

Location 4,975,500 – 4,975,615
Length 115
Sequences 4
Columns 116
Reading direction forward
Mean pairwise identity 80.03
Mean single sequence MFE -18.85
Consensus MFE -16.20
Energy contribution -16.20
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -1.45
Structure conservation index 0.86
SVM decision value 0.36
SVM RNA-class probability 0.703668
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 4975500 115 + 22224390
UCAGUCGGAUGCCAGGACACGCUUAUCCUUUGCGUCCGUCGCCAGCGUCUUCACAUUUCCUUCAGUUUUCCCCAGGCUUUCUUCCACAGCUUUCCCCGCAUUU-UUCCUAGCCCUU
...(.(((((((.((((........))))..))))))).)..................................((((..........((.......))....-.....))))... ( -21.21)
>DroSec_CAF1 41078 102 + 1
UCAGUCGGAUGCCAGGACACGCUUAUCCUUUGCGUCCGUCGCCAGCGUCUUCACAUUUCCCUCAGUUUUCCCCAGGCCUUCU-------------CCGCACUU-UUCCUAUCCCUA
..(((((((.(((.((((..((.........))))))(.((....)).).........................)))....)-------------))).))).-............ ( -18.30)
>DroEre_CAF1 46649 113 + 1
UCAGUCGGAUGCCAGGACACGCUUAUCCUUUGCGUCCGUCGACAUCGUCUUCACGUUUCCUUCAGUUUUUCCCAGGUUUUC---CACAGCUUUCCCCGCAUUUUUUCCUAUCCCUU
...(.(((((((.((((........))))..))))))).)(((...))).........................((....)---)...((.......))................. ( -18.50)
>DroYak_CAF1 43211 91 + 1
UCAGUCGGAUGCCAGGACACGCUUAUCCUUUGCGUCCGUCGCCAUCGUCUUCACAUUUCCUCAACUUUUCCCCUGGUUUUC---C----------------------CCAUCCCUU
...(.(((((((.((((........))))..))))))).).................................(((.....---.----------------------)))...... ( -17.40)
>consensus
UCAGUCGGAUGCCAGGACACGCUUAUCCUUUGCGUCCGUCGCCAGCGUCUUCACAUUUCCUUCAGUUUUCCCCAGGCUUUC___C__________CCGCAUUU_UUCCUAUCCCUU
...(.(((((((.((((........))))..))))))).)............................................................................ (-16.20 = -16.20 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:19:04 2006