| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 4,969,226 – 4,969,333 |
| Length | 107 |
| Max. P | 0.791453 |
| Location | 4,969,226 – 4,969,333 |
|---|---|
| Length | 107 |
| Sequences | 4 |
| Columns | 107 |
| Reading direction | reverse |
| Mean pairwise identity | 87.32 |
| Mean single sequence MFE | -25.43 |
| Consensus MFE | -18.82 |
| Energy contribution | -18.38 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.91 |
| Structure conservation index | 0.74 |
| SVM decision value | 0.59 |
| SVM RNA-class probability | 0.791453 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4969226 107 - 22224390 UAAAAACCAAGCUGUCACGUAUACGCAAUGUGGGCAAUGUUAAUAAUGGCUAAAAGUGUAAUCUGGCCUACGUGACGUAUUAGCUAUUUACGUGACCUUAAAAAUAA .............((((((((((((..((((((((...((((...((........)).))))...))))))))..)))).........))))))))........... ( -26.40) >DroSec_CAF1 35045 106 - 1 UAA-AACCAAGCUGUCACGUAUACGCAGUGUGGGCAAUGUUAAUAAUGGCUGAAAGUGUAAUCUGGCCUACGUGACGUAUUAGCUAUUUACGUGACCUUAAAAAUAC ...-.........((((((((((((((.(((((((...((((...((........)).))))...))))))))).)))).........))))))))........... ( -25.10) >DroEre_CAF1 35986 106 - 1 UAA-AACCACGCCGUCACGUAUACGCAAUGUGGGCAAUGUUAAUAAUGGCUGAAAGUGUAAUCUGGCCUACGUGUCGCAUUAGCUAUUUACGUGACAUUAAAAAUAC ...-.........((((((((...(((((((((.((.(((.......((((((........)).)))).)))))))))))).))....))))))))........... ( -26.20) >DroYak_CAF1 37091 92 - 1 UAA-AA-CACGCCGUCACGUAUACGCAAUGUGAGCAACGUUAAUAAUGGCUGAAAGUGUAAU-------------CGCAUUAGCUAUUUACGUGACAUUAAAAGUAC ...-..-......((((((((.....(((((.....)))))...(((((((((..(((....-------------))).)))))))))))))))))........... ( -24.00) >consensus UAA_AACCAAGCCGUCACGUAUACGCAAUGUGGGCAAUGUUAAUAAUGGCUGAAAGUGUAAUCUGGCCUACGUGACGCAUUAGCUAUUUACGUGACAUUAAAAAUAC .............((((((((...((.......)).........(((((((((..(((.................))).)))))))))))))))))........... (-18.82 = -18.38 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:19:03 2006