Locus 1795

Sequence ID X_DroMel_CAF1
Location 4,968,613 – 4,968,705
Length 92
Max. P 0.858516
window2930

overview

Window 0

Location 4,968,613 – 4,968,705
Length 92
Sequences 4
Columns 105
Reading direction forward
Mean pairwise identity 81.73
Mean single sequence MFE -20.71
Consensus MFE -15.96
Energy contribution -17.15
Covariance contribution 1.19
Combinations/Pair 1.11
Mean z-score -1.89
Structure conservation index 0.77
SVM decision value 0.82
SVM RNA-class probability 0.858516
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 4968613 92 + 22224390
CCAGCAGGAUAUAUAGAAUCCAGGAUACUGGAUUUAGGAUCCAGCAGUUUCGAGCUGCCAAA--AACAAAUACGGCAAACUGACUGAACAAACA-----------
.(((((((((...(.((((((((....)))))))).).)))).(((((.....)))))....--................)).)))........----------- ( -24.30)
>DroSec_CAF1 34405 96 + 1
CCAGCAGGAUAUAUAGAAUCCAGG-------AUUUAGGAUCCAGCAGUUUCGAGCUGCCAAA--AACAAAUACGGCAAACUGACUGAACAAACAGAAAAACAAGU
...((.((((.......)))).((-------(((...))))).(((((.....)))))....--..........)).......(((......))).......... ( -16.70)
>DroEre_CAF1 35301 105 + 1
CCAGCAGGAUAUAAAGAGUCUAGGAUUCUGGAUUUAGGAUCCAGCAGUUUUGAGCUGCCAAAAAAACAAAUACGGCAAACUGACUGAACAAACAGAAAAAUAAGU
.((((((.........((..((((((((((((((...))))))).)))))))..))(((..............)))...))).)))................... ( -23.64)
>DroYak_CAF1 36419 94 + 1
CCAGCAGGAUAUAUAGAAACCAGGAGUCUGGAUUUAGAAUCCAGCCGUUUCGAGCUGCCAAA--AACAAAUACGGCAAACUGA---------CAGAAAAAUAAGU
...((((........(((((..((...((((((.....)))))))))))))....((((...--.........))))..))).---------)............ ( -18.20)
>consensus
CCAGCAGGAUAUAUAGAAUCCAGGAUUCUGGAUUUAGGAUCCAGCAGUUUCGAGCUGCCAAA__AACAAAUACGGCAAACUGACUGAACAAACAGAAAAAUAAGU
...((.((((.....((((((((....))))))))...)))).(((((.....)))))................))............................. (-15.96 = -17.15 +   1.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:19:02 2006