| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 4,953,977 – 4,954,067 |
| Length | 90 |
| Max. P | 0.796267 |
| Location | 4,953,977 – 4,954,067 |
|---|---|
| Length | 90 |
| Sequences | 5 |
| Columns | 90 |
| Reading direction | reverse |
| Mean pairwise identity | 94.66 |
| Mean single sequence MFE | -24.56 |
| Consensus MFE | -20.76 |
| Energy contribution | -20.28 |
| Covariance contribution | -0.48 |
| Combinations/Pair | 1.13 |
| Mean z-score | -1.50 |
| Structure conservation index | 0.85 |
| SVM decision value | 0.60 |
| SVM RNA-class probability | 0.796267 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4953977 90 - 22224390 GCGUUGAGCCAACUAACUGGCUACACGGGACAAAGGACCUGAUCCAGGCGCAAAUAAGUUGGCCAGAAAGGGUUUAACUAUAACACACCC ..((((((((......((((((...((((........)))).....(((........)))))))))....))))))))............ ( -23.70) >DroSec_CAF1 18539 90 - 1 GCGUUGAGCCAACUAACUGGCUACACGGGACAAAGGACCUGAUCCGGGCGCAAAUAAGUUGGCCAGAAAAGGUUUAACUAUAACACACCC ..((((((((......((((((...((((.((.......)).))))(((........)))))))))....))))))))............ ( -23.40) >DroSim_CAF1 12942 90 - 1 GCGUUGAGCCAACUAACUGGCUACACGGGACAAAGGACCUGAUCCGGGCGCAAAUAAGUUGGCCAGAAAGGGUUUAACUAUAACACACCC ..((((((((......((((((...((((.((.......)).))))(((........)))))))))....))))))))............ ( -24.50) >DroEre_CAF1 21053 89 - 1 GCGUUGAGCCAACUAACUGGCUACACUGGACAAAGGACCUGAUUCAGGCGCAAAUAAGUUGACCAGAAAGGGU-UAACUACAACACACCC (((((((((((......))))).))(((((((.......)).))))))))).....((((((((......)))-)))))........... ( -25.70) >DroYak_CAF1 20481 89 - 1 GCGUUGAGCCAACUAACUGGCUACACGGGACAAAGGGACUGAUCCAGGCGCAAAUAAGUUGGCCAGCAAGGGU-UAGCUAUAACACACCC (((((.(((((......)))))...(((..(....)..))).....))))).....((((((((......)))-)))))........... ( -25.50) >consensus GCGUUGAGCCAACUAACUGGCUACACGGGACAAAGGACCUGAUCCAGGCGCAAAUAAGUUGGCCAGAAAGGGUUUAACUAUAACACACCC (((((.(((((......))))).....(((((.......)).))).))))).....((((((((......))).)))))........... (-20.76 = -20.28 + -0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:18:59 2006