Locus 1791

Sequence ID X_DroMel_CAF1
Location 4,952,052 – 4,952,150
Length 98
Max. P 0.968309
window2926

overview

Window 6

Location 4,952,052 – 4,952,150
Length 98
Sequences 6
Columns 114
Reading direction forward
Mean pairwise identity 80.29
Mean single sequence MFE -23.05
Consensus MFE -19.19
Energy contribution -19.58
Covariance contribution 0.39
Combinations/Pair 1.09
Mean z-score -3.14
Structure conservation index 0.83
SVM decision value 1.62
SVM RNA-class probability 0.968309
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 4952052 98 + 22224390
GAUUCAUAAUUUAUAUAACUUUAAUGAACAACAUUAAUAUGCGAAUUAUGACAAGCCAGGGGACUGGCAGCAGCAGCAAUCCACU--------CCACCCUUUUUUU--------
...((((((((..((((...((((((.....))))))))))..))))))))...(((((....))))).((....))........--------.............-------- ( -25.10)
>DroSec_CAF1 16642 93 + 1
GAUUCAUAAUUUAUAUAACUUUAAUGAACAACAUUAAUAUGCGAAUUAUGACAAGCCAGGGGACUGGCAGCAG-AGCAACCCACU--------ACACCCUUU------------
...((((((((..((((...((((((.....))))))))))..))))))))...(((((....))))).....-...........--------.........------------ ( -23.90)
>DroSim_CAF1 11056 94 + 1
GAUUCAUAAUUUAUAUAACUUUAAUGAACAACAUUAAUAUGCGAAUUAUGACAAGCCAGGGGACUGGCAGCAG-AGCAACCCACU--------ACACCCUUU---U--------
...((((((((..((((...((((((.....))))))))))..))))))))...(((((....))))).....-...........--------.........---.-------- ( -23.90)
>DroEre_CAF1 19080 106 + 1
GAUUCAUAAUUUAUAUAACUUUAAUGAACAACAUUAAUAUGCGAAUUAUGGCAAGCCAGGGGACUGGCAGU------AACCCACUAGCGCUCUCCACCCCUUUUC-CUUUUUU-
....(((((((..((((...((((((.....))))))))))..)))))))((..(((((....)))))(((------.....))).)).................-.......- ( -24.60)
>DroYak_CAF1 18493 108 + 1
GAUUCAUAAUUUAUAUAACUUUAAUGAACAACAUUAAUAUGCGAAUUAUGACAAGCCAGGGGACUGACAGC------AACCCACUAGCGCUCUCCACCCUUUUUUUCUUUCUUG
...((((((((..((((...((((((.....))))))))))..))))))))......(((((...((.(((------...........))).))..)))))............. ( -19.30)
>DroAna_CAF1 20791 99 + 1
GAUUCAUAAUUUAUAUAACUUUAAUGAACAACAUUAAUAUGCGAAUUAUGACAAGCCAAGGGACAGCUCG--------UCCCAC----GCUCUUAUCCCUUU-UC-CCUUUUU-
...((((((((..((((...((((((.....))))))))))..))))))))..(((...(((((.....)--------))))..----)))...........-..-.......- ( -21.50)
>consensus
GAUUCAUAAUUUAUAUAACUUUAAUGAACAACAUUAAUAUGCGAAUUAUGACAAGCCAGGGGACUGGCAGC______AACCCACU________CCACCCUUU_U__________
...((((((((..((((...((((((.....))))))))))..))))))))...(((((....))))).............................................. (-19.19 = -19.58 +   0.39)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:18:58 2006