Locus 179

Sequence ID X_DroMel_CAF1
Location 637,938 – 638,054
Length 116
Max. P 0.519953
window282

overview

Window 2

Location 637,938 – 638,054
Length 116
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 94.44
Mean single sequence MFE -26.93
Consensus MFE -23.23
Energy contribution -23.57
Covariance contribution 0.33
Combinations/Pair 1.00
Mean z-score -1.86
Structure conservation index 0.86
SVM decision value -0.03
SVM RNA-class probability 0.519953
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 637938 116 - 22224390
UAUUAGCAAAAUUACACAAUUGCAGUUUGCCUACACCGGCUAAUGUCUGGUAUUAAAUUAGCUAAAAUUGCCAAAUUAGAUUGUGUAAUGGUAAUGAUUCUGGAUUUACUGAUUUG----
(((((.((...((((((((((..((((((.(......(((((((............)))))))......).)))))).)))))))))))).)))))....................---- ( -23.90)
>DroSec_CAF1 3133 120 - 1
UAUUAGCAAAAUUACACAAUUGCAGUUUGCCUACACUGGCUAAUGUAUAGUAUUAAAUUAGCUAAAAUUGCCAAAUUCGAUUGUGUAAUGGUAAUGAUUCUGGAUUAACUGCUUUGUUGU
...(((((((((((((((((((.((((((.(.....((((((((.((......)).)))))))).....).)))))))))))))))))).(((.(((((...)))))..)))))))))). ( -29.50)
>DroSim_CAF1 5158 120 - 1
UAUUAGCAAAAUUACACAAUUGCAGUUUGCCUACACUGGCUAAUGUAUAGUAUUAAAUUAGCUAAAAUUGCCAAAUUAGAUUGUGUAAUGGUAAUGAUUCUGGAUUAACUGCUUUGUUGU
...((((((((((((((((((..((((((.(.....((((((((.((......)).)))))))).....).)))))).))))))))))).(((.(((((...)))))..)))))))))). ( -27.40)
>consensus
UAUUAGCAAAAUUACACAAUUGCAGUUUGCCUACACUGGCUAAUGUAUAGUAUUAAAUUAGCUAAAAUUGCCAAAUUAGAUUGUGUAAUGGUAAUGAUUCUGGAUUAACUGCUUUGUUGU
(((((.((...((((((((((..((((((.(.....((((((((............)))))))).....).)))))).)))))))))))).)))))........................ (-23.23 = -23.57 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:12 2006