Locus 1787

Sequence ID X_DroMel_CAF1
Location 4,936,560 – 4,936,658
Length 98
Max. P 0.548193
window2920

overview

Window 0

Location 4,936,560 – 4,936,658
Length 98
Sequences 4
Columns 101
Reading direction forward
Mean pairwise identity 82.41
Mean single sequence MFE -22.98
Consensus MFE -15.15
Energy contribution -16.27
Covariance contribution 1.13
Combinations/Pair 1.12
Mean z-score -1.62
Structure conservation index 0.66
SVM decision value 0.03
SVM RNA-class probability 0.548193
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 4936560 98 + 22224390
CCCAACAUCAAGCGAACAGUCACCGCCAGGUGGCGCUGCCGCUGAGUCGGAAAAGUUAUCCGAGUUUCGAGCAAAAAAGGAAGA--UUCAUAAAU-AAAAU
.((...............((((((....))))))..(((((..((.(((((.......))))).)).)).))).....))....--.........-..... ( -24.40)
>DroSim_CAF1 1838 90 + 1
C-CAACAUUAAGCGAACA-UCACCGCCAGG-GGCG-UGCCGCUGAGU--GGAAAGGUAUCCGAGUUCG--GCAA-AAAGGGAAA--UUCAUAAAUUAAAAU
(-(.........(((((.-((.(((((((.-((..-..)).))).))--))...((...)))))))))--....-....))...--............... ( -21.73)
>DroEre_CAF1 10911 93 + 1
CCCAACAUCAACCAAACAGUCAUCGCCAGGUGGCGCUGCCGCUGAGUCGGAAAAGUUAUCCGAGUUUCGGGCAAAAAUAA-------AAAUAAAU-ACAAU
..................((((((....))))))..((((...((.(((((.......))))).))...)))).......-------........-..... ( -21.30)
>DroYak_CAF1 10363 100 + 1
CCCAACAUCAACCAAACAGUCACCGCCAGGUGGCGCUGCCGCUGAGUCGGAAAAGUUAUCCGAGUUUCGGGCAAAAAAAGAAAAAGUAAAUAAAU-ACAAU
.......((.........((((((....))))))..((((...((.(((((.......))))).))...))))......))....(((......)-))... ( -24.50)
>consensus
CCCAACAUCAACCAAACAGUCACCGCCAGGUGGCGCUGCCGCUGAGUCGGAAAAGUUAUCCGAGUUUCGGGCAAAAAAAGAAAA__UAAAUAAAU_AAAAU
..................((((((....))))))..((((...((.(((((.......))))).))...))))............................ (-15.15 = -16.27 +   1.13)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:18:53 2006