Locus 1783

Sequence ID X_DroMel_CAF1
Location 4,920,711 – 4,920,808
Length 97
Max. P 0.788588
window2912

overview

Window 2

Location 4,920,711 – 4,920,808
Length 97
Sequences 4
Columns 100
Reading direction reverse
Mean pairwise identity 87.09
Mean single sequence MFE -16.45
Consensus MFE -13.42
Energy contribution -14.99
Covariance contribution 1.56
Combinations/Pair 1.06
Mean z-score -1.75
Structure conservation index 0.82
SVM decision value 0.58
SVM RNA-class probability 0.788588
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 4920711 97 - 22224390
UGCGGAAAGAUAUGCAUAUAUGUAUGAACCAUAUCUUUCUGUCACUCGAGGAUCCUACAGUAUUGGCUCCAAAA---ACCUAAUCAAAACAAAAAAAAAA
.(((((((((((((((((....))))...))))))))))))).......(((.((.........)).)))....---....................... ( -21.80)
>DroSec_CAF1 7388 93 - 1
UGCGGAAAGAUAUGCAU--AUGUAUGAACCAUAUCUUUCUGUCACUCGAGGAUCCUACAGUAUUGGCUCCAAAA---ACCUAAUCAAAACAAAAA--AGA
.((((((((((((((((--....)))...))))))))))))).......(((.((.........)).)))....---..................--... ( -20.40)
>DroEre_CAF1 7150 85 - 1
UUCGGAAAGAUUU------ACGUAUGAACCAUAUC--UCUGUCACUCGAGGAUCCUACAGUAUUGGCUCCAAAA---ACCUAAUCAAAACAAAA----AA
.((((...(((..------..(((((...))))).--...)))..))))(((.((.........)).)))....---.................----.. ( -10.20)
>DroYak_CAF1 7157 89 - 1
UGCGGAAAGGUAU------AUGUAUGAACCAUAUCUCUCUGUCACUCGAGGAUCCUACAGUAUUGGCUCCAAAAACAACCUAAUCAAAUCAAA-----AA
.(((((.((((((------..((....)).)))))).))))).......(((.((.........)).))).......................-----.. ( -13.40)
>consensus
UGCGGAAAGAUAU______AUGUAUGAACCAUAUCUUUCUGUCACUCGAGGAUCCUACAGUAUUGGCUCCAAAA___ACCUAAUCAAAACAAAA____AA
.(((((((((((((...............))))))))))))).......(((.((.........)).))).............................. (-13.42 = -14.99 +   1.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:18:46 2006