| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 4,899,812 – 4,899,912 |
| Length | 100 |
| Max. P | 0.880970 |
| Location | 4,899,812 – 4,899,912 |
|---|---|
| Length | 100 |
| Sequences | 3 |
| Columns | 102 |
| Reading direction | reverse |
| Mean pairwise identity | 79.28 |
| Mean single sequence MFE | -15.33 |
| Consensus MFE | -9.97 |
| Energy contribution | -9.53 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.17 |
| Mean z-score | -2.05 |
| Structure conservation index | 0.65 |
| SVM decision value | 0.92 |
| SVM RNA-class probability | 0.880970 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4899812 100 - 22224390 UUCCCCUUUCAAACAUAUUAACACAUUUU--UUUUUUGUAAAUAAUUCCUAACUCAUGUUACAUUGAGGUAUUACCUUAAUGCGGAAACUAAUUUGCGUACA .............................--......((((((..((((((((....))))((((((((.....)))))))).))))....))))))..... ( -17.10) >DroSec_CAF1 50715 102 - 1 UUCGCCUUUCAAACAUCUUUACACAUGUUGGUUUUUUUUGAAUAAUUCCCAACUCGAGUUACAUUGAGGUAUUACCUUAAUGCGGAAACUAAUUUGCAUACA .......................((.((((((((((......((((((.......))))))((((((((.....)))))))).)))))))))).))...... ( -18.70) >DroEre_CAF1 53833 95 - 1 UUACCCUUUUAUAGCUCUUUACACAUUUU--U-----UUUAAUAACUAAUAACUUAUAUUACAUUAAGGUACUACCUUAAUGCGGAAAUUCAUUUGCAUACA .............((..............--.-----.........(((((.....)))))((((((((.....)))))))).............))..... ( -10.20) >consensus UUCCCCUUUCAAACAUCUUUACACAUUUU__UUUUUUUUAAAUAAUUCCUAACUCAUGUUACAUUGAGGUAUUACCUUAAUGCGGAAACUAAUUUGCAUACA ................................................................(((((.....)))))(((((((......)))))))... ( -9.97 = -9.53 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:18:40 2006