Locus 1777

Sequence ID X_DroMel_CAF1
Location 4,894,004 – 4,894,105
Length 101
Max. P 0.534491
window2905

overview

Window 5

Location 4,894,004 – 4,894,105
Length 101
Sequences 5
Columns 110
Reading direction forward
Mean pairwise identity 87.05
Mean single sequence MFE -15.04
Consensus MFE -13.54
Energy contribution -13.42
Covariance contribution -0.12
Combinations/Pair 1.12
Mean z-score -1.34
Structure conservation index 0.90
SVM decision value 0.00
SVM RNA-class probability 0.534491
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 4894004 101 + 22224390
CA---------AAAUCACGAAAGGACACCCCAAAACAAUCCCUCAAUUAUAAUUGACUUGACUUUGACUUGCAAAGCCGAAGAACUUUCAAAAGACAUGAAGAGGGCAAA
..---------...((.(....)))..............(((((.............(((.(((((.....))))).)))......((((.......))))))))).... ( -15.40)
>DroSec_CAF1 45133 99 + 1
CA---------AAAUCACGAAAGGACCCCCUAAAACAAUCCCUCAUUUAUAAUUGACU--ACUUUGACUUACAAAGCCGAAGAAUUUUCAAAAGACAUGAAGAGGGCAAA
..---------...((.(....)))..............(((((..............--.(((((.((.....)).)))))....((((.......))))))))).... ( -14.70)
>DroSim_CAF1 46376 99 + 1
CA---------AAAUCACGAAAGGACCCCCUAAAACAAUCCCUCAUUUAUAAUUGACU--ACUUUGACUAACAAAGCCGAAGAACUUUCAAAAGUCAUGAAGAGGGCAAA
..---------...((.(....)))..............(((((.((((....(((((--.(((((.....)))))..((((...))))...)))))))))))))).... ( -17.10)
>DroEre_CAF1 48037 108 + 1
CAAAUAAAAAAAAAACACGAAAGGACCUCCAAAAACAAUUCCUCAUUUACAAUUGACU--ACUUUGACUUACAAAGCCGAAGAACUUUCAAAAGACAUGAAGAGGGCAAA
......................((....)).........(((((..............--.(((((.((.....)).)))))....((((.......))))))))).... ( -12.50)
>DroYak_CAF1 46068 107 + 1
CUAACAAAG-GAACUCACGAAAGGACCCCCAAAAACAAUCCCUCAUUUUCAAUUGAUU--ACUUUGACUUACAAGACCGAAGAACUUUCAAAAGACAUGAAGAGGGCAAA
........(-(...((.(....)))...)).........(((((.((.((..((((..--.(((((...........))))).....))))..))...)).))))).... ( -15.50)
>consensus
CA_________AAAUCACGAAAGGACCCCCAAAAACAAUCCCUCAUUUAUAAUUGACU__ACUUUGACUUACAAAGCCGAAGAACUUUCAAAAGACAUGAAGAGGGCAAA
.................(....)................(((((.................(((((.((.....)).)))))....((((.......))))))))).... (-13.54 = -13.42 +  -0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:18:40 2006