Locus 1776

Sequence ID X_DroMel_CAF1
Location 4,893,574 – 4,893,691
Length 117
Max. P 0.518888
window2904

overview

Window 4

Location 4,893,574 – 4,893,691
Length 117
Sequences 3
Columns 117
Reading direction forward
Mean pairwise identity 97.15
Mean single sequence MFE -12.92
Consensus MFE -10.22
Energy contribution -12.05
Covariance contribution 1.83
Combinations/Pair 1.00
Mean z-score -2.51
Structure conservation index 0.79
SVM decision value -0.03
SVM RNA-class probability 0.518888
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 4893574 117 + 22224390
AAAGACCAAAGCAAACCAUUAAACUCACAUAAAACAAUACAAUUUAUAAAAACGAAAACACUGUGUUGUGCAUCAAUCAAUAUAGUAAUAUAUUGAAUUACAUCCAUACAAAACAGA
.................................((((((((....................)))))))).......((((((((....))))))))..................... ( -13.45)
>DroSec_CAF1 44712 117 + 1
AAAGACCAAAGCCAACCAUUAAACUCACAUAAAACAAUACAAUUUAUAAAAACGAAAACACUGUGUUGUGCAUCAAGCAAUAUAGAAAUAUAUUGAAAUACAUCCAUACAAAACAAA
.................................((((((((....................))))))))........(((((((....)))))))...................... ( -12.25)
>DroSim_CAF1 45956 117 + 1
AAAGACCAAAGCCAACCAUUAAACUCACAUAAAACAAUACAAUUUAUAAAAACGAAAACACUGUGUUGUGCAUCAAGCAAUAUAGAAAUAUAUUGAAAUACAUCCAUACAAAACAGA
............................................................((((.(((((.......(((((((....)))))))...........))))).)))). ( -13.07)
>consensus
AAAGACCAAAGCCAACCAUUAAACUCACAUAAAACAAUACAAUUUAUAAAAACGAAAACACUGUGUUGUGCAUCAAGCAAUAUAGAAAUAUAUUGAAAUACAUCCAUACAAAACAGA
.................................((((((((....................))))))))........(((((((....)))))))...................... (-10.22 = -12.05 +   1.83)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:18:39 2006