Locus 1772

Sequence ID X_DroMel_CAF1
Location 4,889,303 – 4,889,408
Length 105
Max. P 0.636500
window2898

overview

Window 8

Location 4,889,303 – 4,889,408
Length 105
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 80.73
Mean single sequence MFE -32.58
Consensus MFE -18.01
Energy contribution -19.64
Covariance contribution 1.63
Combinations/Pair 1.21
Mean z-score -2.09
Structure conservation index 0.55
SVM decision value 0.21
SVM RNA-class probability 0.636500
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 4889303 105 - 22224390
-----------CCAAUGCCUGUUUUGUCCACGUUCCUUUCUGACGCCAGGAAUUUUGCUC---UUGGCCUAACCGAUGUCUAUUUCUGGCCAAGAAGAGCGAAAAGAGACA-AGCAAGAA
-----------....(((.((((((.....(((((..((((...(((((((((...((..---((((.....)))).))..)))))))))..)))))))))....))))))-.))).... ( -32.30)
>DroPse_CAF1 2799 94 - 1
-----------UUUGCCCCU---GUGUCCACGUUCUUUUCUGACGCCAGGAAUCUUGCUCUUCUUGGCCUAACCGAUGUCUAUUUCUGGCCGGGAUCAGG---AAGGAGGA---------
-----------......((.---((....))..((((((((((.((((((((........))))))))....(((..(((.......))))))..)))))---))))))).--------- ( -28.00)
>DroSim_CAF1 41460 103 - 1
-----------CCAAUGCCUGUUUUGUCCACGUUCCUUUCUGACGCCAGGAAUUUUGCUC---UUGGCCUAACCGAUGUCUAUUUCUGGCCAAGAAGAGCGAAAAGAGACA-AGC--GAA
-----------....(((.((((((.....(((((..((((...(((((((((...((..---((((.....)))).))..)))))))))..)))))))))....))))))-.))--).. ( -31.60)
>DroEre_CAF1 43362 103 - 1
-----------CCAAUGCCUGUUUUGUCCACGUUCCUUUCUGACGCCAGGAAUUUUGCUC---UUGGCCUAACCGAUGUCUAUUUCUGGCCAAGAAGAGCGAAAAGAGGCA-GGC--GAA
-----------....((((((((((.....(((((..((((...(((((((((...((..---((((.....)))).))..)))))))))..)))))))))....))))))-)))--).. ( -37.60)
>DroYak_CAF1 41338 103 - 1
-----------CCAAUGCCUGUUUUGUCCACGUUCCUUUCUGACGCCAGGAAUUUUGCUC---UUGGCCUAACCGAUGUCUAUUUCUGGCCAAGAAGAGCGAAAAGAGGCA-AGC--GAA
-----------....(((((.((((.....(((((..((((...(((((((((...((..---((((.....)))).))..)))))))))..))))))))))))).)))))-...--... ( -32.40)
>DroAna_CAF1 99952 112 - 1
UGUUUGGUUAACCAAAGCUUG--UUGUCCACGUUCCUUUCUGACGCCAGGAAUUUUGCUCUUCUUGGCCAAAGCGAUGUCUAUUUCUGGACAAAA----CAGAAAGAGAGAGAGC--GAA
..(((((....)))))((((.--.........((((((((((..((((((((........))))))))........((((((....))))))...----))))))).))).))))--... ( -33.60)
>consensus
___________CCAAUGCCUGUUUUGUCCACGUUCCUUUCUGACGCCAGGAAUUUUGCUC___UUGGCCUAACCGAUGUCUAUUUCUGGCCAAGAAGAGCGAAAAGAGACA_AGC__GAA
....................(((.(((((.......((((((....))))))((((((((...((((((..................))))))...)))))))).).)))).)))..... (-18.01 = -19.64 +   1.63)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:18:33 2006