| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 4,885,887 – 4,885,981 |
| Length | 94 |
| Max. P | 0.584868 |
| Location | 4,885,887 – 4,885,981 |
|---|---|
| Length | 94 |
| Sequences | 4 |
| Columns | 97 |
| Reading direction | reverse |
| Mean pairwise identity | 78.39 |
| Mean single sequence MFE | -19.10 |
| Consensus MFE | -12.65 |
| Energy contribution | -12.96 |
| Covariance contribution | 0.31 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.63 |
| Structure conservation index | 0.66 |
| SVM decision value | 0.10 |
| SVM RNA-class probability | 0.584868 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4885887 94 - 22224390 CAAGGCGUUACUCAUUUGUGGAAUUUUAUUUUAUAGGAUGCAAGGAGUGGAGUGAGAUUUAAUAAAUG--CGUAG-GCUUUAAAUUCUAAAAAAAAA .(((((.((((.(((((((.((((((((((((((............)))))))))))))).)))))))--.))))-)))))................ ( -23.10) >DroSim_CAF1 38149 86 - 1 CAAGGCGUUACUCAUUUGUGGAAUUUUAUUUCAGAGGAAACUAGGAAUGGAGUGAGACUU---AAAUG--CGUAG-GCUUUAAAUUCUAAAC----- .(((((.((((.((((((.(..((((((((((..((....)).))))))))))....).)---)))))--.))))-)))))...........----- ( -22.40) >DroEre_CAF1 40126 80 - 1 CAAGGCGUUACUCAUUUGUGGAAUUUUAUUUUAUAGCAA------ACCAGAGUGAGAUUU---AAAUG--CGUAG-GUUUUAAAUUCUAGAC----- .(((((.((((.(((((...((((((((((((.......------...))))))))))))---)))))--.))))-)))))...........----- ( -13.40) >DroYak_CAF1 38031 86 - 1 CAAGGCGUUACUCAUUUGUGGAAUUUUAUUUGAUAGGAACUC---ACCCGAGUGAGAUUU---AAGUGAACCUACGCAUUUAAAUUCUAGAA----- ....((((...((((((...((((((((((((...((.....---.))))))))))))))---))))))....))))...............----- ( -17.50) >consensus CAAGGCGUUACUCAUUUGUGGAAUUUUAUUUUAUAGGAA_C____ACCGGAGUGAGAUUU___AAAUG__CGUAG_GCUUUAAAUUCUAAAA_____ .(((((.((((.(((((...((((((((((((................))))))))))))...)))))...)))).)))))................ (-12.65 = -12.96 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:18:32 2006