| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 636,508 – 636,601 |
| Length | 93 |
| Max. P | 0.971511 |
| Location | 636,508 – 636,601 |
|---|---|
| Length | 93 |
| Sequences | 4 |
| Columns | 99 |
| Reading direction | forward |
| Mean pairwise identity | 70.66 |
| Mean single sequence MFE | -25.34 |
| Consensus MFE | -12.66 |
| Energy contribution | -12.85 |
| Covariance contribution | 0.19 |
| Combinations/Pair | 1.38 |
| Mean z-score | -2.29 |
| Structure conservation index | 0.50 |
| SVM decision value | 1.68 |
| SVM RNA-class probability | 0.971511 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 636508 93 + 22224390 GUUCCUCACCUGUCUUGCCGCCAUUACAUGGUCUGCGCGUCUCUCUCCCUCCGAGUCCUGCUCUCUCACUCCCA------CUCGUGUAGCAGAGCAGGU .......(((((..((((.(((((...))))).((((((.............(((.....)))...........------..))))))))))..))))) ( -24.37) >DroSec_CAF1 1822 93 + 1 GUUCCUCACCUGUCUUGCCAUCAUUACAUGGUCUGCGCGUCUCUCUCGCUCCGAGUCCUGCUCUCUCACUCCCA------CUCGUGUAGCAGAGCAGGU ....(((....((...(((((......)))))..))(((.......)))...))).(((((((((((((.....------...))).)).)))))))). ( -27.50) >DroSim_CAF1 3844 93 + 1 GUUCCUCACCUGUCUUGCCAUCAUUACAUGGUCUGCGCGUCUCUCUCGCUCCGAGUCCUGCUCUCUCACUCCCA------CUCGUGUAGCUGAGCAGGU ....(((....((...(((((......)))))..))(((.......)))...))).(((((((.(((((.....------...))).))..))))))). ( -25.30) >DroPer_CAF1 3080 88 + 1 --CUCUCUUCUAGCUUGUCGCUCUCUCGCGCUCUCUAUCUCUCUCUCAGUUCA---CCUGCACUGUAU------UGAUAGAAGGUGAGGCAGAGCUCAU --.................(((((.((.(((..((((((.......((((.(.---...).))))...------.))))))..))).)).))))).... ( -24.20) >consensus GUUCCUCACCUGUCUUGCCACCAUUACAUGGUCUGCGCGUCUCUCUCGCUCCGAGUCCUGCUCUCUCACUCCCA______CUCGUGUAGCAGAGCAGGU .......(((((.((((((((......)))))(((((((.............((((...........))))...........)))))))..)))))))) (-12.66 = -12.85 + 0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:10 2006