Locus 1759

Sequence ID X_DroMel_CAF1
Location 4,876,448 – 4,876,566
Length 118
Max. P 0.955831
window2878

overview

Window 8

Location 4,876,448 – 4,876,566
Length 118
Sequences 5
Columns 119
Reading direction forward
Mean pairwise identity 88.46
Mean single sequence MFE -20.58
Consensus MFE -16.04
Energy contribution -16.68
Covariance contribution 0.64
Combinations/Pair 1.05
Mean z-score -2.30
Structure conservation index 0.78
SVM decision value 1.46
SVM RNA-class probability 0.955831
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 4876448 118 + 22224390
AAAAUAACACAACAGAACUACUGCGAAAAA-AAAAACAUUAAAACCAAAUACAACAUUUUUCGUUUCUUAUUGAAAUGGAAAUAGAUUUUUGCAGCAUAGCUGCUACUUUGUAGGCUUG
....................(((((((...-..........................((((((((((.....)))))))))).........(((((...)))))...)))))))..... ( -21.60)
>DroSec_CAF1 27811 119 + 1
AAAAUAACACAACAGAACUACUGCGAAAAAAAAAAACAUUAAAACCAAAUACAACAUUUUUCGUUUCUUAUUGAAAUGGAAAUAGAUUUUUGCAGCAUUGCUGCUACUUUGUAGGCUUG
....................(((((((..............................((((((((((.....)))))))))).........(((((...)))))...)))))))..... ( -21.60)
>DroSim_CAF1 29057 117 + 1
AAAAUAACACAACAGAACUACUGCGAAAAA--AAAACAUUAAAACCAAAUACAACAUUUUUCGUUUCUUAUUGAAAUGGAAAUAGAUUUUUGCAGCAUUGCUGCUACUUUGUAGGCUUG
....................(((((((...--.........................((((((((((.....)))))))))).........(((((...)))))...)))))))..... ( -21.60)
>DroEre_CAF1 30778 105 + 1
AAAAUAACACAACAGUACUACUGCAAA-----AAA-CAUAAAAACAAAAUACAACAUUUUUCUUUUCUUAUUGAAAUGGAAAUAGAUUUCUGCAGCAUUGCU--------GUAGACUUG
............(((.....)))....-----...-.....................(((((.((((.....)))).)))))......((((((((...)))--------))))).... ( -15.90)
>DroYak_CAF1 28541 112 + 1
AAA--AAUACAACAAAACUACUGCAAA-----AAAGUAUAAAAACAAAAUACAACAUUUUUCGUUUCUUAUUGAAAUGGAAAUAGAUUUUUGCAGCAUAGCUGCUACUAUGUAAACUUG
...--...............(((((((-----((.((((.........)))).....((((((((((.....))))))))))....)))))))))(((((......)))))........ ( -22.20)
>consensus
AAAAUAACACAACAGAACUACUGCGAAAAA__AAAACAUUAAAACCAAAUACAACAUUUUUCGUUUCUUAUUGAAAUGGAAAUAGAUUUUUGCAGCAUUGCUGCUACUUUGUAGGCUUG
............(((..((((....................................((((((((((.....)))))))))).........(((((...)))))......))))..))) (-16.04 = -16.68 +   0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:18:16 2006