Locus 1757

Sequence ID X_DroMel_CAF1
Location 4,871,836 – 4,871,937
Length 101
Max. P 0.814853
window2876

overview

Window 6

Location 4,871,836 – 4,871,937
Length 101
Sequences 5
Columns 105
Reading direction reverse
Mean pairwise identity 89.70
Mean single sequence MFE -16.54
Consensus MFE -14.68
Energy contribution -14.64
Covariance contribution -0.04
Combinations/Pair 1.06
Mean z-score -1.45
Structure conservation index 0.89
SVM decision value 0.66
SVM RNA-class probability 0.814853
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 4871836 101 - 22224390
GAAAAAUGGCCAAAAAUGUUCUGCGUUUUAAUUUGAAAGCCGCGCACACACAAAAAUUGUAACAAUCAGCGCCGCACGAGCAAA-AAACAAAAA---ACGCCAGA
......((((..((((((.....))))))..((((...((.((((.......................)))).)).....))))-.........---..)))).. ( -17.10)
>DroSec_CAF1 23342 103 - 1
GAAAAAUGGCCAAAAAUGUUCUGCGUUUUAAUUUGAAAGCCGCGCACACACAAAAAUUGUAACAAUCAGCGCCGCACGAGCAAA-AAAUAAAAAAAAAAG-AAGA
................(((((((((((((......))))).((((.......................)))).))).)))))..-...............-.... ( -15.00)
>DroSim_CAF1 24020 104 - 1
GAAAAAUGGCCAAAAAUGUUCUGCGUUUUAAUUUGAAAGCCGCGCACACACAAAAAUUGUAACAAUCAGCGCCGCACGAGCAAA-AAAUAAAAAAAAAAGCCAGA
......((((..((((((.....))))))..((((...((.((((.......................)))).)).....))))-..............)))).. ( -17.00)
>DroEre_CAF1 26216 95 - 1
GAAAAAUGGCCAAAAAUGUUCUGCGUUUUAAUUUGAAAGCCGCGCACACACAAAAAUUGUAACAAUCAGCGCCGCACGAACAAA-AAA---------UCGCCGGA
......((((......(((((((((((((......))))).((((.......................)))).))).)))))..-...---------..)))).. ( -19.12)
>DroYak_CAF1 23530 96 - 1
GAAAAAUUACCAAAAAUGUUCUGCGUUAUAAUUUGAAAGCCGCGCACACACAAAAAUUGUAACAAUCAGCGCCGCAUGAACAAAAAAA---------UAGCCAGA
...................((((.(((((..((((...((.((((.......................)))).)).....))))...)---------)))))))) ( -14.50)
>consensus
GAAAAAUGGCCAAAAAUGUUCUGCGUUUUAAUUUGAAAGCCGCGCACACACAAAAAUUGUAACAAUCAGCGCCGCACGAGCAAA_AAA_AAAAA___AAGCCAGA
................(((((((((((((......))))).((((.......................)))).))).)))))....................... (-14.68 = -14.64 +  -0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:18:14 2006