Locus 1753

Sequence ID X_DroMel_CAF1
Location 4,870,099 – 4,870,192
Length 93
Max. P 0.655453
window2870

overview

Window 0

Location 4,870,099 – 4,870,192
Length 93
Sequences 5
Columns 106
Reading direction forward
Mean pairwise identity 86.09
Mean single sequence MFE -19.32
Consensus MFE -15.92
Energy contribution -16.42
Covariance contribution 0.50
Combinations/Pair 1.00
Mean z-score -1.57
Structure conservation index 0.82
SVM decision value 0.26
SVM RNA-class probability 0.655453
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 4870099 93 + 22224390
UUCGAUCCACCCGAUCGACGUUUU---------UACACACCAGUUCCAUCAAAAGCCACAAGCGACAGCA--GCAACAGCACCAGCAUCA--CAAGGUGGCAAUUA
.((((((.....))))))......---------.....................(((((..((....)).--((....))..........--....)))))..... ( -19.30)
>DroSec_CAF1 21654 95 + 1
UUCGAUCCACCCGAUCGACGUUUU---------UACACACCAGUUCCAUCAAAAGCCACGAGCGACAGCA--GCAUCAGCACCAGCAUCACACAAGGUGGCAAUUA
.((((((.....))))))......---------.....................(((((((((.......--)).)).((....))..........)))))..... ( -19.80)
>DroSim_CAF1 22377 95 + 1
UUCGAUCCACCCGAUCGACGUUUU---------UACACACCAGUUCCAUCAAAAGCCACGAGCGACAGCA--GCAUCAGCACCAGCAUCACACAAGGUGGCAAUUA
.((((((.....))))))......---------.....................(((((((((.......--)).)).((....))..........)))))..... ( -19.80)
>DroEre_CAF1 24542 85 + 1
AUCGAUCCACCCGAUCGACGUUCA---------UACACACCAGUUCCAUCAAAAGCCACGAGCGACAGCA--GCA-------CAG---CACACAAGGUGGCAAUUA
.((((((.....))))))......---------.....................(((((..((....)).--((.-------..)---).......)))))..... ( -17.80)
>DroYak_CAF1 21798 97 + 1
AUCGAUCCACCCGAUCGACGUUCAUGCACACCAUACACACCAGUUCCAUCAAAAGCCACGAGCGACAGCACAGCA------UCAG---CACACAAGGUGGCAAUUA
.((((((.....))))))......(((.((((.............................((....))...((.------...)---)......))))))).... ( -19.90)
>consensus
UUCGAUCCACCCGAUCGACGUUUU_________UACACACCAGUUCCAUCAAAAGCCACGAGCGACAGCA__GCA_CAGCACCAGCAUCACACAAGGUGGCAAUUA
.((((((.....))))))....................................(((((..((....)).........((....))..........)))))..... (-15.92 = -16.42 +   0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:18:08 2006