Locus 1752

Sequence ID X_DroMel_CAF1
Location 4,867,126 – 4,867,230
Length 104
Max. P 0.579508
window2869

overview

Window 9

Location 4,867,126 – 4,867,230
Length 104
Sequences 5
Columns 104
Reading direction forward
Mean pairwise identity 95.26
Mean single sequence MFE -24.76
Consensus MFE -21.58
Energy contribution -21.34
Covariance contribution -0.24
Combinations/Pair 1.04
Mean z-score -1.25
Structure conservation index 0.87
SVM decision value 0.09
SVM RNA-class probability 0.579508
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 4867126 104 + 22224390
AAUUUCAUUCGGCUCUUGCUUUAUGUAACAUAUAUAUUUUAUAAUUAUAGUUUGCGUGCCCCAGGGCUGAGUGAAUAGCCAUUUGGGUGAGGGUCAUUUCAAUG
...(((((((((((((.(...(((((((..((((...........))))..)))))))..).)))))))))))))....((((..((((.....))))..)))) ( -26.70)
>DroSec_CAF1 18750 102 + 1
AAUUUCUUUCGGCUCUUGCUUUAUGUAACAUA--UAUUUUAUAAUUAUAGUUUGCGUGCCCCAGGGCUGAGUGAAUAGCCAUUUGGGUGAGGGUCAUUUCAAUG
..........((((((..(..(((((((..((--((.........))))..)))))))..(((.(((((......)))))...))))..))))))......... ( -25.70)
>DroSim_CAF1 18893 102 + 1
AAUUUCUUUCGGCUCUUGCUUUAUGUAACAUA--UAUUUUAUAAUUAUAGUUUGCGUGCCCCAGGGCUGAGUGAAUAGCCAUUUGGGUGAGGGUCAUUUCAAUG
..........((((((..(..(((((((..((--((.........))))..)))))))..(((.(((((......)))))...))))..))))))......... ( -25.70)
>DroEre_CAF1 21841 104 + 1
AAUUUCCUUUGGCUUUUGCUUUAUGUAACAUAUAUAUUUUAUAAUUAUAGUUUGCGUGCCUCAGGGCUGACUGAAUAGCCAUUUGGGUGAGGGUCACUUCAAUG
.........(((((((..(..(((((((..((((...........))))..)))))))((....(((((......)))))....)))..)))))))........ ( -22.90)
>DroYak_CAF1 19057 102 + 1
AAUUUCGUUCGGCUUUUGCUUUAUGUAACAUA--UAUUUUAUAAUUGUAGUUUGCGUGCCUCAGGGCUGAGUGAAUAGCCAUUUGGGUGAGGGUCAUUUCAAUG
..........((((((..(..(((((((..((--((.........))))..)))))))((....(((((......)))))....)))..))))))......... ( -22.80)
>consensus
AAUUUCUUUCGGCUCUUGCUUUAUGUAACAUA__UAUUUUAUAAUUAUAGUUUGCGUGCCCCAGGGCUGAGUGAAUAGCCAUUUGGGUGAGGGUCAUUUCAAUG
..........((((((..(..(((((((..((...(((....)))..))..)))))))((....(((((......)))))....)))..))))))......... (-21.58 = -21.34 +  -0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:18:07 2006