Locus 1750

Sequence ID X_DroMel_CAF1
Location 4,866,313 – 4,866,411
Length 98
Max. P 0.723009
window2867

overview

Window 7

Location 4,866,313 – 4,866,411
Length 98
Sequences 4
Columns 111
Reading direction forward
Mean pairwise identity 82.01
Mean single sequence MFE -16.82
Consensus MFE -13.35
Energy contribution -13.35
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -1.66
Structure conservation index 0.79
SVM decision value 0.40
SVM RNA-class probability 0.723009
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 4866313 98 + 22224390
UUCCAUUCCGAUCGAAGAUCUUUAUCCUACGC-----AUCUAAACAAGAACUUCCAGACGUGUGGGCUCCCCAAUGCGAUCUCUUUCU----U----UUCUUUUUUUUUAU
.........(((((...........(((((((-----.(((..............))).)))))))..........))))).......----.----.............. ( -16.44)
>DroSim_CAF1 18029 102 + 1
UUCCAUUCCGAUCGACGAUCUUUAUCCUACGC-----AUCUAAACAAGAACUUCCAGACGUGUGGGCUCCCCAAUGCGAUCUCUUUUUUUCUUUAUUUU----UUUUUCAU
.........(((((...........(((((((-----.(((..............))).)))))))..........)))))..................----........ ( -16.44)
>DroEre_CAF1 21053 85 + 1
UUCCAUUCCGAUCGACGAUCUUUAUCCUACGC-----AUCU-AACAAGAACUUUCAGACGUGUGGGUUCCCAAAUGCGAUCUCUUUC--------------------UUAU
.........(((((...........(((((((-----.(((-.............))).)))))))..........)))))......--------------------.... ( -17.22)
>DroYak_CAF1 18269 90 + 1
UUCCAUUCCGAUCGACGAUCUUUAUCCUACGCAUCGCAUCU-AACAAGAACUUUCAGACGUGUGGGCUCCCCGAUGCGAUCUCUUUC--------------------UUAU
.........(((((.(.(((.....(((((((.((...(((-....))).......)).)))))))......)))))))))......--------------------.... ( -17.20)
>consensus
UUCCAUUCCGAUCGACGAUCUUUAUCCUACGC_____AUCU_AACAAGAACUUCCAGACGUGUGGGCUCCCCAAUGCGAUCUCUUUC____________________UUAU
.........(((((...........(((((((......(((.....))).(.....)..)))))))..........))))).............................. (-13.35 = -13.35 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:18:05 2006