Locus 1743

Sequence ID X_DroMel_CAF1
Location 4,858,986 – 4,859,096
Length 110
Max. P 0.729458
window2856

overview

Window 6

Location 4,858,986 – 4,859,096
Length 110
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 77.15
Mean single sequence MFE -30.60
Consensus MFE -17.83
Energy contribution -19.33
Covariance contribution 1.50
Combinations/Pair 1.16
Mean z-score -1.67
Structure conservation index 0.58
SVM decision value 0.42
SVM RNA-class probability 0.729458
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 4858986 110 + 22224390
CAACGCCUCAUAUG----UUUU---U--CUUUUUUCGAAAUGGGAACGCUCUUGAUUAUUCCUUUGUUUGCCGCCUGCCUUCUCUAAAAGGGGGGCGUGGCACGAGUGGUCCACAUU-UG
..............----....---.--.........((((((((.(((((..((....)).......((((((..(((((((......))))))))))))).))))).))).))))-). ( -31.50)
>DroSec_CAF1 10849 111 + 1
CAACGCCUCAUAUG----UUUU---UUUUUUCUUUCGAAAUGGGAACGCUCUUGAUUAUUCCUUUGUUUGCCGCCUGCCUUCUCUAAAAGG-GGGCGUGGCACGAGUGGUCCACAUU-UG
..............----....---............((((((((.(((((..((....)).......((((((..(((((((.....)))-)))))))))).))))).))).))))-). ( -31.30)
>DroSim_CAF1 10830 115 + 1
CAACGCCUCAUAUGCUUCUUUU---UUUUUUCUUUCGAAAUGGGAACGCUCUUGAUUAUUCCUUUGUUUGCCGCCUGCCUUCUCUAAAAGG-GGGCGUGGCACGAGUGGUCCACAUU-UG
......................---............((((((((.(((((..((....)).......((((((..(((((((.....)))-)))))))))).))))).))).))))-). ( -31.30)
>DroEre_CAF1 12338 101 + 1
CAACGCCUCAUAUG----A------------UUUUCGAAAUGGGAACGCUCUUGAUUAUUCCUUUGU-UGCCGCCUGCCUUCUCUAAAAGG-GGGCGUGGCUCGAGUGGUCCACAUU-UG
..............----.------------......((((((((.(((((..((....))......-.(((((..(((((((.....)))-)))))))))..))))).))).))))-). ( -30.20)
>DroYak_CAF1 11074 100 + 1
GAACGCCUCAUGUU-----------------UUUGCGAAAUGGGAACGCUCUUGAUUAUUCCUUUGU-UGUCGCUAGCCUUCUCUAAAAGG-GGGCGUGGCACGAGUGGUCCACAUU-UG
...(((........-----------------...)))((((((((.(((((..(((.((......))-.)))(((((((((((.....)))-)))).))))..))))).))).))))-). ( -31.50)
>DroAna_CAF1 63030 100 + 1
UAAUGCCUCAAUCG----AUUUAGUGUUCUUCUACUUAAAUUAGAACACUAUUGAUUAUUCCUUA---------------CCUCGGAAAAG-GGGCGGGUCUGGCAUGCUCUACAUUUUG
..(((((..(((((----(..(((((((((............)))))))))))))))....((..---------------((((......)-)))..))...)))))............. ( -27.80)
>consensus
CAACGCCUCAUAUG____UUUU___U___UUCUUUCGAAAUGGGAACGCUCUUGAUUAUUCCUUUGU_UGCCGCCUGCCUUCUCUAAAAGG_GGGCGUGGCACGAGUGGUCCACAUU_UG
......................................(((((((.(((((..((....))........(((((..((((.((......)).)))))))))..))))).))).))))... (-17.83 = -19.33 +   1.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:17:56 2006