Locus 1739

Sequence ID X_DroMel_CAF1
Location 4,843,238 – 4,843,328
Length 90
Max. P 0.644661
window2848

overview

Window 8

Location 4,843,238 – 4,843,328
Length 90
Sequences 6
Columns 90
Reading direction reverse
Mean pairwise identity 80.59
Mean single sequence MFE -32.28
Consensus MFE -22.16
Energy contribution -22.92
Covariance contribution 0.75
Combinations/Pair 1.35
Mean z-score -1.44
Structure conservation index 0.69
SVM decision value 0.23
SVM RNA-class probability 0.644661
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 4843238 90 - 22224390
GACGAUGGCCCCGACUAGAGCCAAAGGUAUAGUGGAUGAUGCCGCGUCGUGUGCGAAGGAUAUCGUUCAGAAAGCCAUUGGUCAUCUCAU
(((((((((....((((..(((...))).))))((((((((((...(((....))).)).)))))))).....)))))).)))....... ( -29.30)
>DroPse_CAF1 48569 90 - 1
GGCGCUCGGCACCACCUCUGCCGAGGGAAUAGUGGAUGACACCGCGUUUUGUUUUGAGCACAUCUGCGAGCGGAUCCGAGCUCAUUUCGU
....(((((((.......)))))))(((((.((((......))))..........((((.((((((....)))))..).))))))))).. ( -28.40)
>DroSec_CAF1 41761 90 - 1
GCCGAUGGCCGCGACUAGAGCCAAAGGUAUAGUGGAUGAUGCCGCGUCGUGUGCGGAGGAUAUCGUUCAGAAAGCCAUUGGUCAUCUGAU
(((((((((....((((..(((...))).))))((((((((((...(((....))).)).)))))))).....)))))))))........ ( -31.30)
>DroSim_CAF1 41769 90 - 1
GCCGAUGGCCGCGACUAGAGCCAAAGGUAUAGUGGAUGAUGCCGCGUCGUGUGCGGAGGAUAUCGUUCAGAAAGCCAUCGGUCAUCUGAU
(((((((((....((((..(((...))).))))((((((((((...(((....))).)).)))))))).....)))))))))........ ( -33.40)
>DroEre_CAF1 52113 90 - 1
GCCGAUGGCCCCGACUAUCGCCAAAGGUAUAGUGGAUGAUGCCGCGCCGGGUGCGGAGUACAUCGUUCAGAUAGCCAUCGGUCAUCUUGU
(((((((((....(((((.(((...))))))))((((((((((((((...))))))....)))))))).....)))))))))........ ( -37.70)
>DroYak_CAF1 43589 90 - 1
GCCGAUGGCCCCGACUAUCGCCAAAGGUAUAGUGGAUGAUGCCGCGUCGAGUGCGGAGGACAUCGUUCAGAUAGCCAUUGGUCAUCUUGU
(((((((((....(((((.(((...))))))))(((((((((((((.....)))))....)))))))).....)))))))))........ ( -33.60)
>consensus
GCCGAUGGCCCCGACUAGAGCCAAAGGUAUAGUGGAUGAUGCCGCGUCGUGUGCGGAGGACAUCGUUCAGAAAGCCAUUGGUCAUCUCAU
(((((((((((((((....(((...)))...((((......))))))))))...(((.(....).))).....)))))))))........ (-22.16 = -22.92 +   0.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:17:48 2006