Locus 1738

Sequence ID X_DroMel_CAF1
Location 4,830,599 – 4,830,716
Length 117
Max. P 0.974360
window2847

overview

Window 7

Location 4,830,599 – 4,830,716
Length 117
Sequences 5
Columns 118
Reading direction forward
Mean pairwise identity 92.84
Mean single sequence MFE -26.74
Consensus MFE -21.82
Energy contribution -22.86
Covariance contribution 1.04
Combinations/Pair 1.04
Mean z-score -2.15
Structure conservation index 0.82
SVM decision value 1.73
SVM RNA-class probability 0.974360
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 4830599 117 + 22224390
CAAAAGGCAUUUUUAUGCUAUAAUUUUAAAAAUCAAAGAAAAUUGAUAAUCUGCAAGUGCCGCAGAACGCAGGCCACUA-UGCACACUUACAGUUGUGGCCAAGAUGUUAGCAAUUUU
.....((((((((..(((.............(((((......)))))..(((((.......)))))..)))((((((..-((........))...))))))))))))))......... ( -28.50)
>DroSec_CAF1 36514 116 + 1
CAAAA-GCAUUUUUAUGCUAUAAUUUUCAAAAUCAAAGAAAAUUGAUAAUCUGCAAGUGCCGCAGAACGCAGGCCACUA-UGCACACUUACAGUUGUGGCCAAGAUGUUAGCAAUCUU
....(-(((((((..(((..((((((((.........))))))))....(((((.......)))))..)))((((((..-((........))...))))))))))))))......... ( -30.50)
>DroSim_CAF1 36373 117 + 1
CAAAAGGCAUUUUUAUGCUAUAAUUUUAAAAAUCAAAGAAAAUUGAUAAUCUGCAAGUGCCGCAGAACGCAGGCCACUA-UGCACACUUACAGUUGUGGCCAAGAUGCUAGCAAUCUU
.....((((((((..(((.............(((((......)))))..(((((.......)))))..)))((((((..-((........))...))))))))))))))......... ( -31.00)
>DroEre_CAF1 46501 116 + 1
CAAAAGGCAUUUAUAUGCUAUAAUUUUAAAAAUCAAAGAAAAUUGAUAAUCUACAAGUGCCGCAGAACGCAGGCCACUA-UGCACACGUACAGUUGUGGCCAAGAUGUUAAGA-UCUU
.....(((((((......((......))...(((((......))))).......)))))))((.....)).((((((..-((........))...))))))(((((......)-)))) ( -24.30)
>DroYak_CAF1 37935 118 + 1
CAAAAGGCAUUUAUAUGCUAUAAUUUUAAGAAUCAAAGAAAAUUGAUAAUCUACAAGUGCCGCAGAACGCCGUCCACUAUUGCACACUUACAAUCGUGGCCAAGACGUUAGUAGUUUC
.....(((((((......((......))((((((((......)))))..)))..)))))))....((((.(..((((.((((........)))).))))....).))))......... ( -19.40)
>consensus
CAAAAGGCAUUUUUAUGCUAUAAUUUUAAAAAUCAAAGAAAAUUGAUAAUCUGCAAGUGCCGCAGAACGCAGGCCACUA_UGCACACUUACAGUUGUGGCCAAGAUGUUAGCAAUCUU
.....(((((((...(((.............(((((......)))))..(((((.......)))))..)))((((((...((........))...)))))).)))))))......... (-21.82 = -22.86 +   1.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:17:47 2006