Locus 1734

Sequence ID X_DroMel_CAF1
Location 4,822,363 – 4,822,465
Length 102
Max. P 0.572555
window2843

overview

Window 3

Location 4,822,363 – 4,822,465
Length 102
Sequences 6
Columns 107
Reading direction reverse
Mean pairwise identity 80.01
Mean single sequence MFE -18.72
Consensus MFE -12.55
Energy contribution -13.33
Covariance contribution 0.78
Combinations/Pair 1.10
Mean z-score -1.31
Structure conservation index 0.67
SVM decision value 0.08
SVM RNA-class probability 0.572555
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 4822363 102 - 22224390
AUUUUUUUUUUUUUUUUGUUUUACAUCGCCUUGUUGUU---GAGCUUGUGUAAACAAGUAUUUUAAUAACUCAAUCAAAACAAAUGAGCCAAAGGAGGCA--AACAG
...........................(((((((((((---((((((((....))))))...))))))))....(((.......))).......))))).--..... ( -18.90)
>DroSec_CAF1 28610 94 - 1
AUUUUUUU-----------UUUACAUCGCCUUGUUGUUGUUAAGCUUGUGUAAACAAGUAUUUUAAUAACUCAAUCAAAACAAAUGAGCCAAAGGAGGCA--AACAG
........-----------........(((((.((((((((((((((((....))))))...))))))))....(((.......)))....)).))))).--..... ( -20.00)
>DroSim_CAF1 27326 94 - 1
AUUUUUUU-----------UUUACGUCGCCUUGUUGUUGUUAAGCUUGUGUAAACAAGUAUUUUAAUAACUCAAUCAAAACAAAUGAGCCAAAGGAGGCA--AACAG
........-----------........(((((.((((((((((((((((....))))))...))))))))....(((.......)))....)).))))).--..... ( -20.00)
>DroEre_CAF1 38265 89 - 1
AUUUUUUU-------------UACAACGCCUUGUUGUU---GAGCUUGUGUAAACAAGUAUUUUAAUAACUCAAUCAAAAUAAAUGACCCAAAGGAGGCA--AACCG
........-------------......(((((((((((---((((((((....))))))...))))))))....(((.......))).......))))).--..... ( -18.60)
>DroYak_CAF1 29619 95 - 1
ACAUUUUU-------UUAUUGUACAACGCCUUGUUGUU---GAGCUUGUGUAAACAAGUAUUUUAAUAACUCAAUCAAAAUAAAUGAGCCAAAGGAGGCA--AACAG
........-------............(((((((((((---((((((((....))))))...))))))))....(((.......))).......))))).--..... ( -18.90)
>DroPer_CAF1 21382 87 - 1
UG-UUUUU-------------UUCUGUUCUGUGUGGCU---G---GUGCGUAAACAAGUAUUUUAAUAACUCAAUCAAAAUUAAUUAGCCAACGGCAGCCGCAGUCG
..-.....-------------..........(((((((---(---((((........))))).........................(((...)))))))))).... ( -15.90)
>consensus
AUUUUUUU___________UUUACAUCGCCUUGUUGUU___GAGCUUGUGUAAACAAGUAUUUUAAUAACUCAAUCAAAACAAAUGAGCCAAAGGAGGCA__AACAG
...........................(((((((((((.....((((((....)))))).....))))))....(((.......))).......)))))........ (-12.55 = -13.33 +   0.78)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:17:43 2006