| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 4,821,649 – 4,821,742 |
| Length | 93 |
| Max. P | 0.647674 |
| Location | 4,821,649 – 4,821,742 |
|---|---|
| Length | 93 |
| Sequences | 4 |
| Columns | 105 |
| Reading direction | reverse |
| Mean pairwise identity | 84.50 |
| Mean single sequence MFE | -21.98 |
| Consensus MFE | -17.73 |
| Energy contribution | -17.85 |
| Covariance contribution | 0.12 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.57 |
| Structure conservation index | 0.81 |
| SVM decision value | 0.24 |
| SVM RNA-class probability | 0.647674 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4821649 93 - 22224390 CCCCCAGACCCCAGAGCCACGAUUCUUACAAAGCCCAUCGAAUGGGCCUCUCUCUUUGCAAAGAGGGUUCAAUAACCCAAUCAAUCGACUGAU------------ ....(((......(((((..............((((((...))))))....(((((....))))))))))..........((....)))))..------------ ( -20.60) >DroSec_CAF1 27894 95 - 1 CCC----------GAGCCACGAUUCUUGCAAAGCCCAUCGAAUGGGCCUCUCGCUUUGCAAAGAGGGUUCAAUAACCCAAUCAAUCGACUGAUAGAUUCACGACU ...----------(((((....(..(((((((((((((...)))))).......)))))))..).)))))........((((.(((....))).))))....... ( -23.61) >DroSim_CAF1 26599 95 - 1 CCC----------GAGCCACGAUUCUCGCAAAGCCCAUCGAAUGGGCCUCUCUCUUUGCAAAGAGGGUUCAAUAACCCAAUCAAUCGACUGAUAGAUUCACGACU ..(----------(.....(((((...(((((((((((...)))))).......))))).....(((((....)))))....)))))..(((.....)))))... ( -21.81) >DroEre_CAF1 37509 95 - 1 UGC----------AAACCACGAUUCUAACAAAGCCCAUCGAAUGGGCCUCUCUCUUUGCAAAGAGGGUUCAAUAACCCAAUCAAUCGACUGGUAGAUUCACGACU ...----------.......((.((((.....((((((...))))))..(((((((....))))))).........(((.((....)).))))))).))...... ( -21.90) >consensus CCC__________GAGCCACGAUUCUUACAAAGCCCAUCGAAUGGGCCUCUCUCUUUGCAAAGAGGGUUCAAUAACCCAAUCAAUCGACUGAUAGAUUCACGACU .............(((((..............((((((...))))))....(((((....)))))))))).........((((......))))............ (-17.73 = -17.85 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:17:42 2006