Locus 1732

Sequence ID X_DroMel_CAF1
Location 4,817,160 – 4,817,254
Length 94
Max. P 0.949532
window2841

overview

Window 1

Location 4,817,160 – 4,817,254
Length 94
Sequences 5
Columns 111
Reading direction reverse
Mean pairwise identity 82.55
Mean single sequence MFE -32.14
Consensus MFE -19.78
Energy contribution -20.38
Covariance contribution 0.60
Combinations/Pair 1.00
Mean z-score -2.68
Structure conservation index 0.62
SVM decision value 1.39
SVM RNA-class probability 0.949532
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 4817160 94 - 22224390
CAGCUGCUCCACAUGCAACAUUCACUGUGCAC-----A------CAUCUCGCCUUAAUAGAGAUGUGUAGCAUGUGGCCCUCGUGCGUGUUGCGUG------UCCCCUUAA
..........(((((((((((.(((.((((((-----(------((((((.........))))))))).)))))))((......))))))))))))------)........ ( -35.80)
>DroSec_CAF1 23639 96 - 1
CAGCUGCUCCACAUGCAACAUUCACUGUGCAC------------UGUGUCUCCUUAAUAGAGAUGUGUAGCAUGUGGGCCUCGUGCGUGUUGCGUGUUG---UCCCCUUAA
..........(((((((((((.(((.((.(((------------((((((((.......))))).....))).))).))...))).)))))))))))..---......... ( -28.70)
>DroSim_CAF1 22337 96 - 1
CAGCUGCUCCACAUGCAACAUUCACUGUGCAC------------UGUGUCUCCUUAAUAGAGAUGUGUAGCAUGUGGGCCUCGUGCGUGUUGCGUGUUG---UCCCCUUAA
..........(((((((((((.(((.((.(((------------((((((((.......))))).....))).))).))...))).)))))))))))..---......... ( -28.70)
>DroEre_CAF1 33137 90 - 1
CAGCUGCUCCACAUGCAACAUUCACUGCACUG----------------UCUCCUUAAUAGAGAUGUGUAGCAUGUACGCCUCGUGCGUGUUGCGUGUCCC-----CCUUAA
..........(((((((((((...((((((.(----------------((((.......)))))))))))...(((((...))))))))))))))))...-----...... ( -30.30)
>DroYak_CAF1 24254 111 - 1
CAGCUGCUCCACAUGCAACAUUCACUGCACUCCCCACACUCCCCACUCACUCCUUAAUAGAGAUGUGCAGCAUGUGGGCCUCGUGCGUGUUGCGUGUCCCCAGCCCGUUAA
..((((....(((((((((((.....((((..((((((..(..(((...(((.......)))..)))..)..))))))....)))))))))))))))...))))....... ( -37.20)
>consensus
CAGCUGCUCCACAUGCAACAUUCACUGUGCAC____________UGUCUCUCCUUAAUAGAGAUGUGUAGCAUGUGGGCCUCGUGCGUGUUGCGUGUCC___UCCCCUUAA
..........(((((((((((...........................((((.......))))......(((((.......)))))))))))))))).............. (-19.78 = -20.38 +   0.60)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:17:42 2006