| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 4,813,629 – 4,813,732 |
| Length | 103 |
| Max. P | 0.586233 |
| Location | 4,813,629 – 4,813,732 |
|---|---|
| Length | 103 |
| Sequences | 6 |
| Columns | 118 |
| Reading direction | forward |
| Mean pairwise identity | 80.45 |
| Mean single sequence MFE | -23.34 |
| Consensus MFE | -14.10 |
| Energy contribution | -14.68 |
| Covariance contribution | 0.58 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.68 |
| Structure conservation index | 0.60 |
| SVM decision value | 0.11 |
| SVM RNA-class probability | 0.586233 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4813629 103 + 22224390 GG------UUCUCACAUAUCGAUCA-ACACAAUUUGAUUCGCAUUUCGCUGGCACCCUCGCCAGAUUUUCAACAUCCAUUUCCCAUUC--------GUGGGAGUCGUGGGAAAUCCAC ((------(((((((....((((((-(......)))).))).......(((((......)))))...............((((((...--------.))))))..)))))))..)).. ( -28.00) >DroPse_CAF1 21756 93 + 1 AGUUCUCCUUCUCACCUAUCGAUCA-ACACAAUUUGAUUCGCAUUUCGAUUGC---CGCGGCAG--------CACCCUUAUCCC-------------UCGCAUUCGUGGGAACCCUCU ........(((((((....((((((-(......)))).)))......((.(((---.(.((...--------..........))-------------.)))).)))))))))...... ( -15.12) >DroSec_CAF1 20211 104 + 1 GG------UUCUCACAUAUCGAUCAUACACAAUUUGAUUCGCAUUUCGCUGGCACCCACGCCAGAUUUUCAACAUCCAUUUCCCAUUC--------GUGGGAGUCGUGGGAAAUCCUC ((------(((((((....((((((.........))).))).......(((((......)))))...............((((((...--------.))))))..)))))))..)).. ( -26.50) >DroSim_CAF1 18902 104 + 1 GG------UUCUCACAUAUCGAUCAUACACAAUUUGAUUCGCAUUUCGCUGGCACCCUCGCCAGAUUUUCAACAUCCAUUUCCCAUUC--------GUGGGAGUCGUGGGAAAUCCUC ((------(((((((....((((((.........))).))).......(((((......)))))...............((((((...--------.))))))..)))))))..)).. ( -26.50) >DroEre_CAF1 29622 101 + 1 GG------UUCUCACAUAUCGAUCA-ACACAAUUUGAUUCGCAUUUCGGUGGCACCCUCGCCAGAUUUUCGACAUCCAUUUCC----------CAUUUGCAAGUCGUGGGAAAUCCUC ((------(((((((.....(((((-(......)))))).(((..(.((((((......))))(((.......))).....))----------.)..))).....)))))))..)).. ( -21.60) >DroYak_CAF1 20667 111 + 1 GG------UUCUCACAUAUCGAUCA-ACACAAUUUGAUUCGCAUUUCGUUGGCACCCUCGCCAGAUUUUCCACAUCCAUUUCCCAUUUUUUCCCAUUUGCAAGUCGUGGGAAAUGCUC ((------...((......((((((-(......)))).)))........((((......))))))....)).....((((((((((..(((.(.....).)))..))))))))))... ( -22.30) >consensus GG______UUCUCACAUAUCGAUCA_ACACAAUUUGAUUCGCAUUUCGCUGGCACCCUCGCCAGAUUUUCAACAUCCAUUUCCCAUUC________GUGGGAGUCGUGGGAAAUCCUC ........(((((((....((((((.........))).))).......(((((......))))).........................................)))))))...... (-14.10 = -14.68 + 0.58)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:17:39 2006