Locus 1728

Sequence ID X_DroMel_CAF1
Location 4,811,238 – 4,811,331
Length 93
Max. P 0.510069
window2835

overview

Window 5

Location 4,811,238 – 4,811,331
Length 93
Sequences 5
Columns 101
Reading direction reverse
Mean pairwise identity 84.42
Mean single sequence MFE -16.49
Consensus MFE -11.68
Energy contribution -11.68
Covariance contribution -0.00
Combinations/Pair 1.12
Mean z-score -1.57
Structure conservation index 0.71
SVM decision value -0.05
SVM RNA-class probability 0.510069
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 4811238 93 - 22224390
UGAUCGGCGCAGAAGUAAGUGAGAUCGGGU--------AGAAGUUGAGAAGAAAAAAAAAACGUAAAGGAAAGAUAUGUGGCUAAGCAGCGACGAUCAACU
.((((..(((........))).))))....--------...((((((..............(.....)........(((.(((....))).))).)))))) ( -16.30)
>DroSec_CAF1 18134 86 - 1
UGAUCGGCGCACAAGUUAGUGAGAUCGGGG--------AGAAGUUGAGAAAACA-------ACUAAAGGAAAGAUAUGUGGCUAAGCAGCGACGAUCAACU
((((((.(((.....(((((.(.(((....--------...(((((......))-------)))........)))...).)))))...))).))))))... ( -19.76)
>DroSim_CAF1 16550 86 - 1
UGAUCGGCGCACAAGUAAGUGAGAUCGGGG--------AGAAGUUGAGAAAAAA-------ACUAAAGGAAAGAUAUGUGGCUAAGCAGCGACGAUCAACU
.((((..(((........))).))))....--------...((((........)-------)))........(((.(((.(((....))).)))))).... ( -16.20)
>DroEre_CAF1 27210 83 - 1
UGAUCAGUGAAGAAGUAAGUGAGAUCGGG---------AGAAG--GAGAAAAAA-------ACUAAAGGAAAGAUAUGUGGCUAAGCAGCGGCGAUCAACU
(((((...................((...---------.))..--.........-------................((.(((....))).)))))))... ( -12.20)
>DroYak_CAF1 18177 92 - 1
UGAUCAGUGAAGAAGUAAGUGAGAUCGGCGAAGGCCAAGGAGA--GAGAAAAAA-------ACUAAAGGAAAGAUAUGUGGCUAAGCAGCGACGAUCAACU
...(((.(.........).)))(((((((....))).......--.........-------................((.(((....))).)))))).... ( -18.00)
>consensus
UGAUCGGCGCAGAAGUAAGUGAGAUCGGGG________AGAAGUUGAGAAAAAA_______ACUAAAGGAAAGAUAUGUGGCUAAGCAGCGACGAUCAACU
.((((..(((........))).))))..............................................(((.(((.(((....))).)))))).... (-11.68 = -11.68 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:17:36 2006