| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 4,805,066 – 4,805,156 |
| Length | 90 |
| Max. P | 0.992116 |
| Location | 4,805,066 – 4,805,156 |
|---|---|
| Length | 90 |
| Sequences | 4 |
| Columns | 90 |
| Reading direction | reverse |
| Mean pairwise identity | 78.98 |
| Mean single sequence MFE | -20.63 |
| Consensus MFE | -17.64 |
| Energy contribution | -16.83 |
| Covariance contribution | -0.81 |
| Combinations/Pair | 1.25 |
| Mean z-score | -2.31 |
| Structure conservation index | 0.85 |
| SVM decision value | 2.31 |
| SVM RNA-class probability | 0.992116 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4805066 90 - 22224390 ACGCGGGCAAAAGUGCGCUCCUGUGCUGGGAUAAAAAAAAAAAGAAAAAAAUAGUGCUAGUGGGAGGCAGCAGGCUGGCGGAGUGGAAAA .(((.(((.....(((.(((((..(((((.((.....................)).)))))))))))))....))).))).......... ( -26.00) >DroSec_CAF1 12206 72 - 1 ---------AAAGUGCGCUCCUGUGCUAGAAUAAAAAA---------AAAAUAGUGCUAGUGGGAGGCAGCAGGCUGGCGGAGUGGAAAA ---------......((((((...((((..........---------....))))((((((..(......)..))))))))))))..... ( -18.94) >DroEre_CAF1 18400 76 - 1 UCGCGGGUAA-AGUGCGCUCCUGUGCUGAAAUGAA-------------AAAUAGUGCUAGUGGGAGGCAGCAGGUUGGCGGAGUGGAAAA ((((.(((..-..(((.((((((..(((.......-------------...)))..)....))))))))....))).))))......... ( -17.30) >DroYak_CAF1 12280 77 - 1 UCGCAGGUAAAAGUGCGCUCCUGUACUGAGAUGAA-------------AAACAGUGCUAGUGGGAGGCAGCGGGUUGGCGGAGUGGAAAA ((((.........(((.(((((((((((.......-------------...))))))....))))))))((......))...)))).... ( -20.30) >consensus UCGCGGGUAAAAGUGCGCUCCUGUGCUGAAAUAAA_____________AAAUAGUGCUAGUGGGAGGCAGCAGGCUGGCGGAGUGGAAAA ...............((((((.((((((.......................))))))........(.(((....))).)))))))..... (-17.64 = -16.83 + -0.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:17:35 2006