Locus 1724

Sequence ID X_DroMel_CAF1
Location 4,801,298 – 4,801,395
Length 97
Max. P 0.959899
window2831

overview

Window 1

Location 4,801,298 – 4,801,395
Length 97
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 72.40
Mean single sequence MFE -32.86
Consensus MFE -22.03
Energy contribution -22.95
Covariance contribution 0.92
Combinations/Pair 1.22
Mean z-score -1.76
Structure conservation index 0.67
SVM decision value 1.51
SVM RNA-class probability 0.959899
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 4801298 97 + 22224390
----------------------CUAGGGAUGGGCGAUUCAAAUAAGUGCCCGGAGCUUUCGUGACUAUCGUGCAAAG-CUCGUGACACGACCGGCGAAACAGCGAGAUUGGCCAUCUCUA
----------------------.(((((((((.((((((......(((..(((((((((((((.....)))).))))-))).)).))).....((......)))).)))).))))))))) ( -32.80)
>DroSec_CAF1 8504 97 + 1
----------------------CUAGGGAUGGUCGAUUCAAAUAAGUGCCAGGAGCUUUCGUGCUUAACGGACAAAG-UUCGUGACACGACCGGAAAAACAGCGAGAUUGGCCAUCUCUA
----------------------.((((((((((((((((......(((.((.(((((((.((.(.....).))))))-))).)).)))....(......)...)).)))))))))))))) ( -34.80)
>DroSim_CAF1 8402 97 + 1
----------------------CUAGGGAUGGGCGAUUCAAAUAAGUGCCAGGAGCUUUCGUGCCUAACGGACAAAG-UUCGUGACACGACCGGAGAAACAGCGAGAUUUGCCAUCUCUA
----------------------.(((((((((.(((.((......(((.((.(((((((.((.((....))))))))-))).)).)))....(......).....)).)))))))))))) ( -33.80)
>DroEre_CAF1 14541 118 + 1
GAUCGCUGUAAUUAACGCCUGCUUAGGGGUGGGCCAUUCAAAUAA-UACUCGGAGCUUUCGUGUCUAUCGCGUUAAA-UUCGUGACACGACCACAAGAACAGCACGAUUGCCCAUCUCUA
....((.((.......))..)).(((((((((((.(((.....))-)..(((..((((((.(((...(((.((((..-....)))).)))..))).))).))).)))..))))))))))) ( -29.50)
>DroYak_CAF1 8450 118 + 1
GAUCGCUUAAACUAAACCUUACUUAAGGAUGGGCGAUUCAAAUGA--ACGGGGAGCUUUCGUGUCUAUCGGAUUAAAGCUCGUGACACGUCCACAAGAACAGCGCGAUCGCCCAUCUCUA
.........................(((((((((((((....((.--.....(((((((...(((.....))).)))))))(((.......))).....))....))))))))))).)). ( -33.40)
>consensus
______________________CUAGGGAUGGGCGAUUCAAAUAAGUGCCAGGAGCUUUCGUGCCUAUCGGACAAAG_UUCGUGACACGACCGGAAAAACAGCGAGAUUGGCCAUCUCUA
.......................(((((((((((((((.............((.....(((((.(...((((......)))).).))))))).............))))))))))))))) (-22.03 = -22.95 +   0.92)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:17:33 2006