Locus 1722

Sequence ID X_DroMel_CAF1
Location 4,799,390 – 4,799,481
Length 91
Max. P 0.638003
window2829

overview

Window 9

Location 4,799,390 – 4,799,481
Length 91
Sequences 6
Columns 91
Reading direction reverse
Mean pairwise identity 82.23
Mean single sequence MFE -27.90
Consensus MFE -20.49
Energy contribution -20.33
Covariance contribution -0.16
Combinations/Pair 1.36
Mean z-score -1.57
Structure conservation index 0.73
SVM decision value 0.22
SVM RNA-class probability 0.638003
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 4799390 91 - 22224390
CUGAUCCUCAUCCUCAUCCUUGUUGGUCAUUAAAUCCGCGUCCAGUUUCUCGGCCAUGGCCAGAGAAGCUCGUAUGGGCAAGGUUCCCAUU
.(((((..((..........))..)))))......((..(((((((((((((((....))).))))))).....)))))..))........ ( -25.90)
>DroSec_CAF1 6691 91 - 1
CUGAUCCUCAACCUCAUCCUUGUUGGUCAUUAAAUCCGCGUCCAGUUUCUCGGCCAUGGCCAAAGAAGCUCGUAUGGGCAAGGUUCCCAUU
.(((((..(((........)))..)))))......((..(((((((((((.(((....)))..)))))).....)))))..))........ ( -22.70)
>DroSim_CAF1 6565 91 - 1
CUGAUCCUCAACCUCAUCCUUGUUGGUCAUUAAAUCCGCGUCCAGUUUCUCGGCCAUGGCCAGAGAAGCUCGUAUGGGCAAGGUUCCCAUU
.(((((..(((........)))..)))))......((..(((((((((((((((....))).))))))).....)))))..))........ ( -26.80)
>DroEre_CAF1 12715 88 - 1
GUGCU---GCUCCUCAUCCUUGUCGAUCAUUAAAUCUGCGUCCAGUUUCUCGGCCAUGGCCAGAGAAGCACGUAUGGGCAAGGUUCCCAUU
.....---.........((((((((((......)))(((((...((((((((((....))).))))))))))))..)))))))........ ( -28.10)
>DroYak_CAF1 6576 88 - 1
GUGGU---GCUCCUCAUCCUUGUCGGUCAUUACAUCCGCGUCCAGUUUCUCGGCCAUGGCCAGAGAAGCUCGUAUGGGCAAGGUUCCCAUU
(.((.---...)).)..(((((((((.........)).((((.(((((((((((....))).)))))))).).))))))))))........ ( -29.20)
>DroAna_CAF1 7026 91 - 1
CUGGCUACCUUUCGCACUGACAUGGUCCAGCAAGUCCUGGUCCAGCUCCUCGGCCUUGGCCAAGGAGGCUCGUAUCGGGAGUGUUCCCAUU
.(((..((((..((...((((.(((.((((......)))).))).(((((.(((....))).)))))).)))...))..)).))..))).. ( -34.70)
>consensus
CUGAUCCUCAUCCUCAUCCUUGUUGGUCAUUAAAUCCGCGUCCAGUUUCUCGGCCAUGGCCAGAGAAGCUCGUAUGGGCAAGGUUCCCAUU
.................((((((((((......)))..((((.(((((((((((....))).)))))))).).))))))))))........ (-20.49 = -20.33 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:17:31 2006