Locus 172

Sequence ID X_DroMel_CAF1
Location 624,059 – 624,157
Length 98
Max. P 0.868080
window275

overview

Window 5

Location 624,059 – 624,157
Length 98
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 80.28
Mean single sequence MFE -26.13
Consensus MFE -21.62
Energy contribution -21.50
Covariance contribution -0.12
Combinations/Pair 1.11
Mean z-score -1.77
Structure conservation index 0.83
SVM decision value 0.86
SVM RNA-class probability 0.868080
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 624059 98 + 22224390
----------------CAAAGCCCUUCAUUUCUUGGCGGGCAACUUUAUUAGCACCCGGCGCGGCUCACAUCU-UCGCCGACACUGCGCGGGACUAUCUCC-----CCCUCCUUCCGCCA
----------------....((((.(((.....))).))))................((((((((........-..)))).........((((.....)))-----)........)))). ( -27.10)
>DroSec_CAF1 8556 98 + 1
----------------CAAAGCUCUUAAUUUCUUGGCGGGCAACUUUAUUAGCAACCGGCGCGGCUUACAUCU-UCGCCGACUCCGCGCGGACCUAUCUCC-----CCCUCCUUCCGCCA
----------------.................(((((((...........((...(((.(((((........-..)))).).))).))(((......)))-----.......))))))) ( -24.80)
>DroSim_CAF1 2817 98 + 1
----------------CCAAGCUCUUAAUUUCUUGGCGGGCAACUUUAUUAGCAACCGGCGCGGCUCACAUCU-UCGCCGACUCCGCGCGGGCCUAUCUCC-----CCCUCCUUCCACCA
----------------.................(((.(((.........(((...((.((((((.((......-.....))..)))))).)).))).....-----....))).)))... ( -21.37)
>DroEre_CAF1 8863 120 + 1
UCCCCACUCACCACUCCACAGCUCCUCAUUUCUUGGCGGGCAGCUUUAUUAGCACCCGGCGCGGCUCACAUCUUUCGCCGCCUGCGCCUGGUUCCAUCUCUCCUUUCCCUCCUUCCGCCA
.................................(((((((..(((.....)))(((.((((((((..............))).))))).))).....................))))))) ( -31.24)
>consensus
________________CAAAGCUCUUAAUUUCUUGGCGGGCAACUUUAUUAGCAACCGGCGCGGCUCACAUCU_UCGCCGACUCCGCGCGGGCCUAUCUCC_____CCCUCCUUCCGCCA
.................................((((((((..........))..((((((((((...........))))....))).))).......................)))))) (-21.62 = -21.50 +  -0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:03 2006