Locus 1719

Sequence ID X_DroMel_CAF1
Location 4,790,322 – 4,790,426
Length 104
Max. P 0.776267
window2823

overview

Window 3

Location 4,790,322 – 4,790,426
Length 104
Sequences 4
Columns 104
Reading direction forward
Mean pairwise identity 74.27
Mean single sequence MFE -16.79
Consensus MFE -11.65
Energy contribution -11.09
Covariance contribution -0.56
Combinations/Pair 1.33
Mean z-score -1.56
Structure conservation index 0.69
SVM decision value 0.54
SVM RNA-class probability 0.776267
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 4790322 104 + 22224390
AUUUUAUGCAAGCCAAGCCUUUAUCAUUUGAUUUCAAAUCGAUAACAUGUUACAAAAGAUAUGGACCAUAGUUAAUCUACAAUUAUCGAUGGUUUGCAGUAAUA
......(((((((((...........((((....))))(((((((((((((......)))))).....(((.....)))...))))))))))))))))...... ( -24.40)
>DroSec_CAF1 36129 89 + 1
AUUUUAUGCAAGCCAUGCUAUUAUCUUAUGAUUUCAAAUCGAUAACAUAUUACAAAA--------------UUAAACUACAAUUAUCGAUGGUUUGCAGUG-UA
......((((((((.((..(((((...)))))..)).((((((((............--------------...........))))))))))))))))...-.. ( -17.30)
>DroSim_CAF1 22579 89 + 1
AUUUUAUGCAAGCUAUGCUAUUAUCUUAUGAUUUCAAAUCGAUAACAUGUUACAAAA--------------UUAAUCUACAAUUAUCGAUGGUUUGCAGUG-UA
......((((((((.((..(((((...)))))..)).((((((((..(((.......--------------.......))).))))))))))))))))...-.. ( -16.74)
>DroYak_CAF1 19827 82 + 1
AUUUUAGGAAAAUCAUGCUCUUAUCUU-UGAUUUCAAAUCGAUAGCUUUCUUAG--------------------AGAUACAUUUAUUGGUUGUUUGCAUUG-CA
.((((((((((.....(((...(((((-((....))))..))))))))))))))--------------------)).........................-.. (  -8.70)
>consensus
AUUUUAUGCAAGCCAUGCUAUUAUCUUAUGAUUUCAAAUCGAUAACAUGUUACAAAA______________UUAAUCUACAAUUAUCGAUGGUUUGCAGUG_UA
.......(((((((........(((....))).....((((((((.....................................)))))))))))))))....... (-11.65 = -11.09 +  -0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:17:26 2006