Locus 1715

Sequence ID X_DroMel_CAF1
Location 4,779,553 – 4,779,661
Length 108
Max. P 0.658678
window2813

overview

Window 3

Location 4,779,553 – 4,779,661
Length 108
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 85.99
Mean single sequence MFE -28.10
Consensus MFE -22.46
Energy contribution -22.80
Covariance contribution 0.34
Combinations/Pair 1.09
Mean z-score -1.92
Structure conservation index 0.80
SVM decision value 0.26
SVM RNA-class probability 0.658678
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 4779553 108 + 22224390
CCAACUGACGAAACUGACGAAAAUCGACUAGAGGUGGUGGAGA---------AACAUCGAUGCCAAACAUCGAUAUUUUCGAAAAAUCACAUAAAUUGGUG---UUUUUUGAUGAAUCAU
.(((..(((........((.....))(((((..(((((...((---------((.(((((((.....)))))))..)))).....))))).....))))))---))..)))......... ( -20.00)
>DroSec_CAF1 18553 117 + 1
CCAACUGGCGAAACUGACGAAAAUCGACUAGAGGUGGAGAAAAAUUGAUGCCAACAUCGAUGUCAAACAUCGAUAUUUUCGAAGAAUCACAAACAUCGGUG---UUUUUCGAGGAAUCAU
(((.(((((((............))).))))...)))........((((.((...(((((((.....)))))))....((((((((.(((........)))---)))))))))).)))). ( -31.00)
>DroSim_CAF1 13355 120 + 1
CCAACUGGCGAAUCUGACGAAAAUCGACUAGAGGUGGAGAAAAAUUGAUGCCAACAUCGAUGUCAAACAUCGAUAUUUUCGAAGAAUCACAAACAUCGGUUUGUUUUUUCGAGGAAUCAU
(((.(((((((.((....))...))).))))...)))........((((.((...(((((((.....)))))))....((((((((..((((((....)))))))))))))))).)))). ( -33.30)
>consensus
CCAACUGGCGAAACUGACGAAAAUCGACUAGAGGUGGAGAAAAAUUGAUGCCAACAUCGAUGUCAAACAUCGAUAUUUUCGAAGAAUCACAAACAUCGGUG___UUUUUCGAGGAAUCAU
(((.(((((((............))).))))...))).((...............(((((((.....))))))).(((((((((((.(((........)))...))))))))))).)).. (-22.46 = -22.80 +   0.34)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:17:17 2006