| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 4,775,407 – 4,775,507 |
| Length | 100 |
| Max. P | 0.602335 |
| Location | 4,775,407 – 4,775,507 |
|---|---|
| Length | 100 |
| Sequences | 3 |
| Columns | 106 |
| Reading direction | forward |
| Mean pairwise identity | 74.84 |
| Mean single sequence MFE | -21.67 |
| Consensus MFE | -12.35 |
| Energy contribution | -14.13 |
| Covariance contribution | 1.78 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.74 |
| Structure conservation index | 0.57 |
| SVM decision value | 0.14 |
| SVM RNA-class probability | 0.602335 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4775407 100 + 22224390 ----GCUGAACAGCUGUUGGAA--GUGUUGAAAAGCGCCCAAACUGACAACAUGUAAAUGCACUUAUGCAUAUAUGCAUAUGUAUGCUUCAAGUUCACAAACCAAA ----..(((((.(.(((..(..--(((((....))))).....)..))).).((...(((((..((((((....)))))))))))....)).)))))......... ( -22.90) >DroSec_CAF1 11989 102 + 1 ----GCUGAACAGCUGUUGGAACAGUGUUGAAAAGCGCUCAAACUGACAACAUGUUAUUGCAUUUAUGCAUAUAUGCACAUGCAUGCUUUAAGUUCACAAACCAAA ----..(((((...(((..(...((((((....))))))....)..))).(((((...(((((.((....)).)))))...)))))......)))))......... ( -25.40) >DroYak_CAF1 9453 89 + 1 AAAUUCUGAACAGCUGUUGGAACAGUGUUGAUAAGGGGCUAAACUAACAACAUGUAAA----------------UGCAUAUGUAUGCUUCAAGUUCACGAUAAA-A ..(((.((((((((((((((...(((.((.....)).)))...))))))((((((...----------------...))))))..)))....))))).)))...-. ( -16.70) >consensus ____GCUGAACAGCUGUUGGAACAGUGUUGAAAAGCGCCCAAACUGACAACAUGUAAAUGCA_UUAUGCAUAUAUGCAUAUGUAUGCUUCAAGUUCACAAACCAAA ......(((((.(.((((((....(((((....))))).....)))))).)........................((((....)))).....)))))......... (-12.35 = -14.13 + 1.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:17:11 2006