Locus 1707

Sequence ID X_DroMel_CAF1
Location 4,758,436 – 4,758,548
Length 112
Max. P 0.671860
window2800

overview

Window 0

Location 4,758,436 – 4,758,548
Length 112
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 85.00
Mean single sequence MFE -35.92
Consensus MFE -24.79
Energy contribution -25.02
Covariance contribution 0.23
Combinations/Pair 1.27
Mean z-score -3.02
Structure conservation index 0.69
SVM decision value 0.29
SVM RNA-class probability 0.671860
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 4758436 112 + 22224390
------G--CAGGUGACGAACCUGAACAACCAUAUGAAGUCGCACCACAAGGUGCAGCAGUACUGCUGCAACGUGUGCAACAAGAAGUUCACGCAGGUGACCUCGCUGAACCAGCACCUG
------.--(((((.....)))))...........((.((((((((....)))((((((....))))))...(((((.(((.....))))))))..))))).))((((...))))..... ( -39.00)
>DroVir_CAF1 23603 112 + 1
------G--CAGGUGACCAAUCUGAACAACCACAUGAAGUCGCAUCACAAGGUGCAGCAGUAUUGCUGCAAUGUGUGCAGCAAGAAGUUCACGCAGGUCACCUCAUUGAAUCAACAUCUG
------(--.((((((((....(((((...........((.(((((....))))).))....((((((((.....))))))))...)))))....)))))))))................ ( -38.80)
>DroGri_CAF1 1140 114 + 1
------GAUUAGGUGACCAAUCUGAACAAUCACAUGAAGUCACACCACAAGGUGCAGCAGUAUUGCUGCAACGUUUGCAGCAAGAAGUUCACACAGGUCACCUCCCUGAAUCAGCAUCUG
------((((((((((((....(((((...........((..((((....))))..))....((((((((.....))))))))...)))))....)))))))).....))))........ ( -38.50)
>DroWil_CAF1 10919 112 + 1
------A--CAGGUUACCAACCUCAACAAUCAUAUGAAAUCGCACCACAAGGUCCAACAAUAUUGCUGCAAUGUGUGUAGCAAAAAAUUCACCCAGGUCACCUCGCUGAAUCAGCAUUUG
------.--.((((.(((.......................(.(((....))).).......((((((((.....))))))))............))).)))).((((...))))..... ( -24.20)
>DroMoj_CAF1 1067 118 + 1
ACCCUGG--CAGGUGACCAAUCUGAACAAUCACAUGAAGUCGCAUCACAAAGUGCAGCAGUACUGCUGCAACGUGUGCAGCAAGAAGUUCACGCAGGUCACCUCACUGAACCAGCAUCUG
...((((--.((((((((....(((((..((....)).((.(((.(((....(((((((....)))))))..)))))).)).....)))))....)))))))).......))))...... ( -40.60)
>DroAna_CAF1 8929 111 + 1
---------UAGGUGACGAAUCUGAACAAUCAUAUGAAGUCGCACCACAAGGUGCAGCAGUAUUGUUGCAACGUUUGCAACAAGAAGUUCACGCAGGUGACAUCGCUGAACCAACACCUG
---------((((((.......(((((...........((.(((((....))))).))....((((((((.....))))))))...)))))....((((....)))).......)))))) ( -34.40)
>consensus
______G__CAGGUGACCAAUCUGAACAAUCACAUGAAGUCGCACCACAAGGUGCAGCAGUAUUGCUGCAACGUGUGCAGCAAGAAGUUCACGCAGGUCACCUCGCUGAACCAGCAUCUG
.........((((((.......(((((...........((.(((((....))))).))....((((((((.....))))))))...)))))..((((......).)))......)))))) (-24.79 = -25.02 +   0.23)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:17:05 2006