Locus 1706

Sequence ID X_DroMel_CAF1
Location 4,756,847 – 4,756,956
Length 109
Max. P 0.511719
window2799

overview

Window 9

Location 4,756,847 – 4,756,956
Length 109
Sequences 3
Columns 109
Reading direction forward
Mean pairwise identity 92.59
Mean single sequence MFE -19.16
Consensus MFE -16.18
Energy contribution -16.96
Covariance contribution 0.78
Combinations/Pair 1.05
Mean z-score -1.87
Structure conservation index 0.84
SVM decision value -0.04
SVM RNA-class probability 0.511719
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 4756847 109 + 22224390
CAGAAGAGUGCUUUACUUCCCAGGGAGUUCGACUCCUGCUCCUUUUGCUGCACUUGUUUAUUAUUGUUGUGCUAUUUUCUCUUCAUUUUCUUACAUUUCACUACUACUC
..((((((.((...........(((((.....))))).........)).((((...............))))......))))))......................... ( -19.51)
>DroSim_CAF1 759 106 + 1
UAGAAGUGGGCUUUACUCCCCAGGGAGUUCGACUCCUGCUCCUUUUGCUGCACUUGUUUAUUAUUGUUGUGCUAUUUUCUCUUCAUUUUCUUACAUUUCACU---ACUC
..(((((((((...........(((((.....))))).........)))((((...............)))).....................))))))...---.... ( -19.61)
>DroEre_CAF1 4522 106 + 1
UAGAAAAGGACUUUACUCCCACGGGAGUUCGACUCCUGCUCCUCUUGCUGCACUUGUUUAUUAUUGUUGUGCUAUUUUCUCUUCAUUUUCUUACAUUUCACU---ACUC
..((((((((.((.(((((....)))))..)).))))((.......)).((((...............)))).......................))))...---.... ( -18.36)
>consensus
UAGAAGAGGGCUUUACUCCCCAGGGAGUUCGACUCCUGCUCCUUUUGCUGCACUUGUUUAUUAUUGUUGUGCUAUUUUCUCUUCAUUUUCUUACAUUUCACU___ACUC
..((((((((............(((((.....)))))((.......)).((((...............))))....))))))))......................... (-16.18 = -16.96 +   0.78)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:17:04 2006