| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 4,755,737 – 4,755,839 |
| Length | 102 |
| Max. P | 0.542851 |
| Location | 4,755,737 – 4,755,839 |
|---|---|
| Length | 102 |
| Sequences | 5 |
| Columns | 102 |
| Reading direction | forward |
| Mean pairwise identity | 73.09 |
| Mean single sequence MFE | -15.85 |
| Consensus MFE | -5.46 |
| Energy contribution | -5.70 |
| Covariance contribution | 0.24 |
| Combinations/Pair | 1.27 |
| Mean z-score | -1.70 |
| Structure conservation index | 0.34 |
| SVM decision value | 0.02 |
| SVM RNA-class probability | 0.542851 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4755737 102 + 22224390 AAGCGAAAGAAUAACAAAACGUUGUACCGAAGAAAAAAAAUAACAUGAAAUGAAAACAACAACAACAAAGCAACGAGCUGCUGGUGCUGUUGUUAUUGUAGU ...(....)....((((...(((((..............))))).............(((((((.((.((((......))))..)).))))))).))))... ( -16.44) >DroVir_CAF1 20517 90 + 1 AA-CGAAAGAAUAACA--ACGCUGUAGAGGGGGAA-AAAAAAACAUGAAAUGAAAACAACAA------A--CCGUCGUUGCCGUCGCCUGUGUUGUUGUAGU ..-(....).((((((--((((....((.((....-.......(((...)))....((((..------.--.....)))))).))....))))))))))... ( -20.00) >DroEre_CAF1 3509 100 + 1 AAGCGAAAGAAUAACAAAACGUUGUACCGAAGAAAAAAAAUAACAUGAAAUGAAAACAGCAACAACAAG--AAGAAGCUGCUGGUGCUUUUGUUAUUGUAGU ...(....)((((((((((....((((((..............(((...)))....((((..(......--..)..)))).))))))))))))))))..... ( -17.30) >DroYak_CAF1 3514 90 + 1 AAGCGAAAGAAUAACAAAACGUUGUACCGAAGAAA-AAAAUAACAUAAAAUGAAAACAACAACA-----------AGCUGCUGGUGCUGUUGUUAUUGUAGU ...(....)....((((...(((((..........-...))))).............(((((((-----------.((.......))))))))).))))... ( -12.52) >DroAna_CAF1 4266 92 + 1 AAGCAAAAGAAUAACAAAACGCUGUACCAAAAACA-ACAAAAAGA---GGAGAAAAAAAACA---CACG--A-AACGUUGCCAGUGUUGUUGUUAUUAUUAU .........(((((((((((((((..((.......-.........---))..........((---.(((--.-..))))).))))))).))))))))..... ( -12.99) >consensus AAGCGAAAGAAUAACAAAACGUUGUACCGAAGAAA_AAAAUAACAUGAAAUGAAAACAACAACA_CA_A__A_GAAGCUGCUGGUGCUGUUGUUAUUGUAGU ...(....)((((((((......((((((....................................................))))))..))))))))..... ( -5.46 = -5.70 + 0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:17:03 2006