Locus 1703

Sequence ID X_DroMel_CAF1
Location 4,739,064 – 4,739,180
Length 116
Max. P 0.997091
window2796

overview

Window 6

Location 4,739,064 – 4,739,180
Length 116
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 74.49
Mean single sequence MFE -42.26
Consensus MFE -21.30
Energy contribution -20.90
Covariance contribution -0.40
Combinations/Pair 1.35
Mean z-score -2.60
Structure conservation index 0.50
SVM decision value 2.80
SVM RNA-class probability 0.997091
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 4739064 116 - 22224390
UAGGGUGAU-UCGAUGGGUGUUUCCAUGGGC---AAAGCCUAAGCGGCUUACGCACCCAAUCAUCAACUCUGCCAUCGUCGAUUGAAGUUCGCUUUGAUUGAGAAGCAGACGAGCGUGAA
..(((((..-((.(((((....))))).)).---.(((((.....)))))...)))))..((((....(((((..((.(((((..(((....)))..))))))).))))).....)))). ( -40.40)
>DroSec_CAF1 31901 116 - 1
UGGGUUGAU-UCGAUGGGUGUUUCCAUGGGC---AAAGCCUAAGCAGCUUACGCUCCCAAUCAUCAACUCUGCCAUCGACGGUUGAAGUUCGCUUUGAUUGAGAGGCAGGGGAGCGUGGA
((((((...-((.(((((....))))).)).---..))))))......((((((((((...........(((((.((..((((..(((....)))..)))).))))))))))))))))). ( -45.70)
>DroEre_CAF1 35438 114 - 1
UG-GGUGGC-ACGAUGGGUGUUUCCAUGGGC---AAAGCCUAAGCGGCUUAGGG-CCCAAUCAUCAACUCUGCCACCGUCGAUUGAAGUUCGCUUUGAUUGAGAGGCACGGAAGUGUGGA
..-((((((-(.((((((....))))(((((---.(((((.....)))))...)-)))).........))))))))).(((((..(((....)))..)))))...((((....))))... ( -49.30)
>DroYak_CAF1 33306 99 - 1
UG-GGUGGU-UCAGUGGGUGUUUCCAUGGGC---AAAGCCUAAGCGGCUUAGGC-CCCAAUCAUCAACUCUACUAGCGUCGAUUGAAGUUCGCUUUGAUUGAUAG---------------
..-((((((-(..(((((....)))))((((---.(((((.....)))))..))-)).)))))))............((((((..(((....)))..))))))..--------------- ( -34.60)
>DroAna_CAF1 43203 106 - 1
UGGGGUGGGGCUGGUGGAUGGUUUUGUUGGCCCAAAAGCCUAAGCCGCUUAGGC-CCC-AUCAU------------CCUCGAUUGGAGUUCCUUUUGAUUGAAAUUCACAGGAGCAUGGA
...((((((((((((((..((((((.........))))))....)))))..)))-)))-))).(------------((......)))((((((..(((.......))).))))))..... ( -41.30)
>consensus
UGGGGUGGU_UCGAUGGGUGUUUCCAUGGGC___AAAGCCUAAGCGGCUUAGGC_CCCAAUCAUCAACUCUGCCAUCGUCGAUUGAAGUUCGCUUUGAUUGAGAGGCACAGGAGCGUGGA
...(((((.....(((((....)))))(((.....(((((.....))))).....)))..))))).............(((((..(((....)))..))))).................. (-21.30 = -20.90 +  -0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:17:01 2006