| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 4,738,652 – 4,738,759 |
| Length | 107 |
| Max. P | 0.558356 |
| Location | 4,738,652 – 4,738,759 |
|---|---|
| Length | 107 |
| Sequences | 3 |
| Columns | 116 |
| Reading direction | reverse |
| Mean pairwise identity | 78.11 |
| Mean single sequence MFE | -34.34 |
| Consensus MFE | -21.53 |
| Energy contribution | -20.53 |
| Covariance contribution | -0.99 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.62 |
| Structure conservation index | 0.63 |
| SVM decision value | 0.05 |
| SVM RNA-class probability | 0.558356 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4738652 107 - 22224390 ---------ACGUUCCCGAGGCUUUUCCAUCGCUUUCCUCGCUAGUUUUCCAUGCGAAAGCGAAGGCGGUCAAAAGGCAGUCGUCAAGUGGCUAAGACAAGCGGCAGAAAAAAAAA ---------...(((.(((.((((((..((((((((((((((...........))))..).)))))))))..))))))..)))....((.(((......))).)).)))....... ( -30.40) >DroSec_CAF1 31515 106 - 1 CCCACCAACACGUUCCCGAGGCUUUUCCAACGCUUUCCUCGCUA-UUUUCCAUGCGAAAG-GAAGGCGGUCAAAAGG---GCGUCAAGUGGCUAAGACAAGCGGCGGCAAA----- .((.((..(((......((.((((((....((((((((((((..-........))))..)-))))))).....))))---)).))..)))(((......))))).))....----- ( -34.20) >DroEre_CAF1 35030 106 - 1 UCUGUCAACGCGUUCCCUAGGCUUUUCCAGCGCCUUCUCCACUA-UUUUCCAGGCGGAAA-GAAGGCGGUCAAAAGG---CCGUCAAGUGGCUAAUACAAGCGGCAGAGAA----- ((((((..(((........(((((((..(.((((((((((.((.-.......)).)))..-))))))).)..)))))---)).....)))(((......)))))))))...----- ( -38.42) >consensus _C___CAACACGUUCCCGAGGCUUUUCCAACGCUUUCCUCGCUA_UUUUCCAUGCGAAAG_GAAGGCGGUCAAAAGG___CCGUCAAGUGGCUAAGACAAGCGGCAGAAAA_____ .........(((...((..((.....))..((((((((((((...........))))..).))))))).......))....)))...((.(((......))).))........... (-21.53 = -20.53 + -0.99)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:17:00 2006