Locus 1701

Sequence ID X_DroMel_CAF1
Location 4,737,713 – 4,737,833
Length 120
Max. P 0.809228
window2794

overview

Window 4

Location 4,737,713 – 4,737,833
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 96.08
Mean single sequence MFE -35.80
Consensus MFE -31.60
Energy contribution -32.00
Covariance contribution 0.40
Combinations/Pair 1.09
Mean z-score -1.42
Structure conservation index 0.88
SVM decision value 0.64
SVM RNA-class probability 0.809228
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 4737713 120 + 22224390
ACAUAAACAACAGUUACGCUCGAACAACGGGCAAAGUUGCAUUUCCGCUGUAACCGUUUUCCGCACAGGAAAUGCGUUCGACGCGUGUUUGAAAUAUUGGGCCCGAAAGUCGCAGCCCUC
..........(((.((((((((((((((.......)))((((((((..(((...........)))..)))))))))))))).))))).))).......((((.((.....))..)))).. ( -37.80)
>DroSec_CAF1 30578 120 + 1
ACAUAAACAACAGUUACGCUCGAACAACGAGCAAAGUUGCAUUUCCGCUGUAACCGUUUUCCGCACAGGAAAUGCGUUCGACGCGUGUUUGAAAUAUUGGGACCGAAAGUCGCAGCCCUG
..........(((.((((((((((((((.......)))((((((((..(((...........)))..)))))))))))))).))))).))).......(((..((.....))...))).. ( -35.40)
>DroEre_CAF1 34084 120 + 1
ACAUAAACAACAGUUACGCUCGAACAACGGGCAAAGUUGCAUUUCCGCUGUAACCGUUUUCCGCACAGGAAAUGCGUUCGACGCGUGUUUGAAAUAUUGGGCCCGAAAGUCGCAGCCCUG
..........(((.((((((((((((((.......)))((((((((..(((...........)))..)))))))))))))).))))).))).......((((.((.....))..)))).. ( -37.80)
>DroYak_CAF1 31937 120 + 1
ACAUAAACAACAGUUACGCUCGAACAACGGGCAAAGUUGCAUUUCCGCUGUAACCGUUUUCCGCACAGGAAAUGCGUUCGACGCGUGUUUGAAAUAUUGGGUCCGAAAGUCGCAGCCCUG
..........(((.((((((((((((((.......)))((((((((..(((...........)))..)))))))))))))).))))).))).......((((.((.....))..)))).. ( -36.10)
>DroAna_CAF1 34741 116 + 1
ACAUAAACAACAGUUACGCUCGAACAACGGGCAAAGUUGCAUUUCCGCUGUAACCGUUUUCCGUACGGGAAAUGCGUUCGACGCGUGUUUGAAAUAUUGGGCCCGAAAGUCUC----UUG
..........(((.(((((((((((..........((((((.......))))))((((((((....)))))))).)))))).))))).))).......(((..(....)..))----).. ( -31.90)
>consensus
ACAUAAACAACAGUUACGCUCGAACAACGGGCAAAGUUGCAUUUCCGCUGUAACCGUUUUCCGCACAGGAAAUGCGUUCGACGCGUGUUUGAAAUAUUGGGCCCGAAAGUCGCAGCCCUG
..........(((.((((((((((((((.......)))((((((((..(((...........)))..)))))))))))))).))))).))).......((((.(....).....)))).. (-31.60 = -32.00 +   0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:16:59 2006