Locus 17

Sequence ID X_DroMel_CAF1
Location 42,756 – 42,871
Length 115
Max. P 0.986901
window19

overview

Window 9

Location 42,756 – 42,871
Length 115
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 73.53
Mean single sequence MFE -20.17
Consensus MFE -7.12
Energy contribution -8.18
Covariance contribution 1.06
Combinations/Pair 1.12
Mean z-score -2.33
Structure conservation index 0.35
SVM decision value 2.06
SVM RNA-class probability 0.986901
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 42756 115 - 22224390
AAAACAUGUUUACAAAGUUAAAUCUUUAAGAAA---UAAUCCAAAAAGUCAAAAAAUAUGAAUUCUGAUGGAGAACUCUGUGAAUAAAAAA--CUGUAGCCGAAUGGAUUUUAGGACAUC
......((((((((.((((...(((...((((.---............(((.......))).))))...))).)))).)))))))).....--(((...((....))....)))...... ( -15.24)
>DroSec_CAF1 29341 117 - 1
AAAACAUGAUUACAAAGUUAAAUCUUUAAGAAA--AAAAUCCAAAAAGUCCAAAAAUAUUAAUAUUGACGGAGAACUCUGUCAAUAAAAACU-UUGGAGCCGAAUGGAUUUUAGGACAUC
.....(((.....((((......))))......--....(((..((((((((..........((((((((((....)))))))))).....(-(((....)))))))))))).)))))). ( -24.20)
>DroSim_CAF1 29974 117 - 1
AAAACAUGAUUACAAAGUUAAAUCUUUAAGAAA--AAAAUCCAAAAAGUCCAAAAAUAUUAAUAUUGACGGAGAACUCUGUGAAUAAAAACU-UUGGAGCCGAAUGGAUUUUAGGACAUC
.....(((.....((((......))))......--....(((..((((((((..........((((.(((((....))))).)))).....(-(((....)))))))))))).)))))). ( -20.10)
>DroEre_CAF1 11777 108 - 1
AAAAUAUGGUGACACAGUUAACACUAUAAGAAA--AAAUUCC----AGUCCAAAAAUAUUACC------GGAGAACUCUUUGAAUAAACAUUUUUAGAGCCAAUCGGAUUUUAGGACAUU
....(((((((..........))))))).....--.......----.((((.(((((....((------((....((((..((((....))))..))))....))))))))).))))... ( -21.10)
>DroYak_CAF1 23743 92 - 1
AAAAUAUGGUGACACAGUUAAAACCGUAAGAAAAAAAAUUCC----AGUCCAAAAAUGUAAAU---------------AUUGACG---------AAGAGUCAGGUGGAUUUUAGGACAUU
....((((((............))))))..............----.((((.(((((.((...---------------.(((((.---------....))))).)).))))).))))... ( -20.20)
>consensus
AAAACAUGAUUACAAAGUUAAAUCUUUAAGAAA__AAAAUCCAAAAAGUCCAAAAAUAUUAAU__UGA_GGAGAACUCUGUGAAUAAAAACU_UUGGAGCCGAAUGGAUUUUAGGACAUC
...............................................((((.(((((..........(((((....)))))..................((....))))))).))))... ( -7.12 =  -8.18 +   1.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:31:22 2006