| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 4,718,895 – 4,718,987 |
| Length | 92 |
| Max. P | 0.619901 |
| Location | 4,718,895 – 4,718,987 |
|---|---|
| Length | 92 |
| Sequences | 4 |
| Columns | 110 |
| Reading direction | forward |
| Mean pairwise identity | 66.89 |
| Mean single sequence MFE | -20.73 |
| Consensus MFE | -8.76 |
| Energy contribution | -9.13 |
| Covariance contribution | 0.37 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.98 |
| Structure conservation index | 0.42 |
| SVM decision value | 0.18 |
| SVM RNA-class probability | 0.619901 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4718895 92 + 22224390 AAUAUUGAACGUGUUGAGCACACACACACACACA-----------CACGCAUAAGUGCACGGCCACUCACAC-CGCUGCACUUGUACGC--UUGCACAC----AAACGUG ..........(((((((((...........(...-----------...).((((((((((((.........)-)).)))))))))..))--))).))))----....... ( -21.40) >DroSec_CAF1 11765 92 + 1 AAUAUUGAACGUGUUGAGCACACACACACACACU-----------CA--CACAAGUGCACGGCCACUCACAC-UGCUGCACUUGUACGCUCUUGCACAC----AGACGUG ..........((((((......)).)))).((((-----------(.--.((((((((((((.........)-)).)))))))))..((....))....----.)).))) ( -22.20) >DroEre_CAF1 14320 78 + 1 AAUAUUGAACGUGUUGAGCACAC--AC-----------------------ACAAGUGCAGGGCCACUCACAC-UGCUGCACUUGUAC----UUGCACACAC--AUACGUG ........((((((((.(((...--..-----------------------((((((((((.(..........-).))))))))))..----.))).))...--)))))). ( -21.90) >DroAna_CAF1 12419 99 + 1 AAUAUUGAACA-------CACACACACACACACCCAACGAGUGUGCACACACAAGUGCACUUUCCCCGACCCAAGCUGCACUCAUACA----UGUAUAUACAGGGAUAUG ...........-------..............(((...((((((((((......)))).(((..........)))..)))))).....----(((....))))))..... ( -17.40) >consensus AAUAUUGAACGUGUUGAGCACACACACACACAC____________CA__CACAAGUGCACGGCCACUCACAC_UGCUGCACUUGUACG___UUGCACAC____AGACGUG ..................................................(((((((((.................)))))))))......................... ( -8.76 = -9.13 + 0.37)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:16:48 2006