| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 4,712,763 – 4,712,869 |
| Length | 106 |
| Max. P | 0.641429 |
| Location | 4,712,763 – 4,712,869 |
|---|---|
| Length | 106 |
| Sequences | 3 |
| Columns | 112 |
| Reading direction | reverse |
| Mean pairwise identity | 84.38 |
| Mean single sequence MFE | -23.23 |
| Consensus MFE | -16.16 |
| Energy contribution | -15.28 |
| Covariance contribution | -0.88 |
| Combinations/Pair | 1.18 |
| Mean z-score | -2.01 |
| Structure conservation index | 0.70 |
| SVM decision value | 0.22 |
| SVM RNA-class probability | 0.641429 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4712763 106 - 22224390 AUGUGUGU------GUGUGUGUGUGCGCACAUUGUGCUUACAUAACUCAAAUAGAAAUUCAAAACUCGGCCCGAAGUCGAAAACUGAGAAAUUUGCAUACAAAAGUAUCUGA .(((((((------...((((((.((((.....)))).)))))).((((....(.....).....(((((.....)))))....))))......)))))))........... ( -25.30) >DroSec_CAF1 5906 96 - 1 AUGUGUGU------G----------UGCACAUUGUGCUUACAUAACUCAAAUAGAAAUUCAAAACUCGGCCCGAAGUCGAAAACUGAGAAAUUUGCAUACGAAAGUAUCUGA ...(((((------(----------.((((...)))).)))))).......((((..((((....(((((.....)))))....)))).........(((....))))))). ( -20.90) >DroEre_CAF1 6832 102 - 1 AUGUGCACGAGUAUG----------UGCACAUUGUGCUAACAUAACUCAAAUAGAAAUUCAAAACUCGACACGAAGUCGAAAACUGAGAAAUUUGCAUACAAAAGUAUCAGA .((((((.(((((((----------(((((...))))..)))).)))).........((((....(((((.....)))))....)))).....))))))............. ( -23.50) >consensus AUGUGUGU______G__________UGCACAUUGUGCUUACAUAACUCAAAUAGAAAUUCAAAACUCGGCCCGAAGUCGAAAACUGAGAAAUUUGCAUACAAAAGUAUCUGA (((((((..................)))))))(((((........((((....(.....).....(((((.....)))))....))))......)))))............. (-16.16 = -15.28 + -0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:16:44 2006