Locus 169

Sequence ID X_DroMel_CAF1
Location 622,967 – 623,082
Length 115
Max. P 0.535369
window271

overview

Window 1

Location 622,967 – 623,082
Length 115
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 87.57
Mean single sequence MFE -34.78
Consensus MFE -24.62
Energy contribution -25.88
Covariance contribution 1.25
Combinations/Pair 1.10
Mean z-score -1.48
Structure conservation index 0.71
SVM decision value 0.00
SVM RNA-class probability 0.535369
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 622967 115 + 22224390
----UCGCAGAUGGAGUC-UUCUUACCUGGCCCAUCCCGAUGGGCCAGAAGGCCUUAUCACACGGACCCGUCCGUCGCUCGCUUAUCAUUUAAUGAACGCCCAGCUUCUAUUCCCAAUCC
----.....((((..(((-((((.....(((((((....))))))))))))))..))))..(((((....))))).(((.((...((((...))))..))..)))............... ( -34.60)
>DroSec_CAF1 7364 116 + 1
G---UCGGAGAUGGAGUC-UUCUUACCUUGCCCAUCCUGAUGGGUCAGAGGCCCUUAUCACGCGGACCCGUCCGUCGCUCGCUUAUCAUUUAAUGAACGCCCAGCUUCUAUUCCCAAUCC
(---((((.(((((.((.-..........))))))))))))(((..((((((........((((((....)))).))...((...((((...))))..))...))))))...)))..... ( -32.10)
>DroSim_CAF1 1625 116 + 1
G---UCGGAGAUGGAGUC-UUCUUACCUUGCCCAUCCUGAUGGGUCAGAGGCCCUUAUCACGCGGACCCGUCCGUCGCUCGCUUAUCAUUUAAUGAACGCCCAGCUUCUAUUCCCAAUCC
(---((((.(((((.((.-..........))))))))))))(((..((((((........((((((....)))).))...((...((((...))))..))...))))))...)))..... ( -32.10)
>DroEre_CAF1 7702 115 + 1
GGUGGUGUGGAUGGAGUCCUUCUUACCUGUCCCAUC-----GGGUCGGAAGGCCUUAUCAGGCGGACCCGUCCGUCGCUCUGUUAUCACUUAAUGAACGCCCAGCUUCUAUUCCCAGUCG
((((((((((((((.((((((((.(((((......)-----)))).)))).((((....))))))))))))))).))).......(((.....))).))))................... ( -40.30)
>consensus
G___UCGGAGAUGGAGUC_UUCUUACCUGGCCCAUCCUGAUGGGUCAGAAGCCCUUAUCACGCGGACCCGUCCGUCGCUCGCUUAUCAUUUAAUGAACGCCCAGCUUCUAUUCCCAAUCC
......((.(((((((..........(((((((((....))))))))).............(((((....))))).(((......(((.....)))......)))))))))).))..... (-24.62 = -25.88 +   1.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:37:58 2006