| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 4,710,891 – 4,710,997 |
| Length | 106 |
| Max. P | 0.958518 |
| Location | 4,710,891 – 4,710,997 |
|---|---|
| Length | 106 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 79.08 |
| Mean single sequence MFE | -27.54 |
| Consensus MFE | -18.31 |
| Energy contribution | -18.20 |
| Covariance contribution | -0.11 |
| Combinations/Pair | 1.05 |
| Mean z-score | -2.25 |
| Structure conservation index | 0.66 |
| SVM decision value | 1.49 |
| SVM RNA-class probability | 0.958518 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4710891 106 + 22224390 AGAGAGGAAGUG----------A--GGCUUCAUGCAUAUUGAAACAAAGUGAGUGCUCGCAUUGCGUAUACGCAGCGUGGCCGCCAAA--GCAAAUUAAAUAAAAAUAACCGAAAAGAAG .....((.....----------.--(((..(((((.............((((....))))..((((....))))))))))))((....--)).................))......... ( -22.90) >DroPse_CAF1 24696 109 + 1 AGAGAAAGAGUA----------AGGGGGUACAUGCAUAUUGAAACAAAGUGUGUGCUCGCAUUGCGUAUACGCAGCGUGGCCUCCAAAAAACCAAUUAAAUGAAAAAAUCUCAAAGCC-A .((((.......----------.((((((.(((((............((((((....))))))(((....))).))))))))))).......((......))......))))......-. ( -29.30) >DroPer_CAF1 24050 119 + 1 AGAGAAAGAGGAGCUAUCACAAGAGGGGUACAUGCAUAUUGAAACAAAGUGUGUGCUCGCAUUGCGUAUACGCAGCGUGGCCUCCAAAAAACCAAUUAAAUGAAAAAAUCUCAAAGCC-A .((((....((((...((((.....((((((((((.............))))))))))((..((((....)))))))))).)))).......((......))......))))......-. ( -30.42) >consensus AGAGAAAGAGUA__________A_GGGGUACAUGCAUAUUGAAACAAAGUGUGUGCUCGCAUUGCGUAUACGCAGCGUGGCCUCCAAAAAACCAAUUAAAUGAAAAAAUCUCAAAGCC_A .........................(((.....(((((((.......)))))))((.(((.(((((....))))).))))).)))................................... (-18.31 = -18.20 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:16:40 2006